RNA id: AMCG00018493


Basic Information

Item Value
RNA id AMCG00018493
length 3243
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00018493
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12489467 ~ 12500054 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTCTAGGGGTGGAGCTGGGAAAAGTACAGGTCTACCAGGAAGCCAACAGAGAAACCAGAGTGCAGATCCAGGAGTCGGTCAGAGGGAAAGATGTCTTCATCATCCAGACAGTGTCAAAGGATGTCAACACCACCATCATGGAGCTCCTTATCATGGTGTACGCGTGCCGGACGTCCTGTGCTCGCAGCATCATCGGTGTCATCCCCTACTTCCCCTACAGCAAGCAGTGCAAGATGAGAAAGAGGGGCTCCATCGTCTCCAAGCTGCTGGCCTCCATGATGTGTAAAGCAGGCTTGACGCATCTGATCACCATGGATCTACACCAGAAGGAAATCCAGGGCTTCTTTAACATCCCAGTCGACAACCTGCGCGCCTCCCCTTTCCTCTTGCAGTACATCCAGGAGGAGGGATGTCTGCCGCTGTGCAGCAGCAGAGCGGGCCGCAGCCTCAGTGACGGCGCTGTTGTGTGGTCTTGCAGGGCCCAGTCGTTTGCGGAGCGCCTGCGGCTGGGCATTGCGGTGATCCACGGCGAGGCGCAGGACGCTGAGTCAGACCTGGTGGATGGACGCCACTCGCCGCCCACTGTCAAGAACATGGGAGCCATCCACCCCAGCCTAGAGATACCTTTGCTGATTCCCAAAGAAAAGCCCCCGATCACAGTAGTGGGAGATGTAGGGGGGCGCATCGCCATTATTGTGGATGACATCATCGACGACGTGGACAGTTTCCTGGCGGCGGCCGACACTCTAAAGGAGAGGGGGGCCTACAAGATCTACGTCATGGCCACCCACGGCATCCTGTCCTCCGACGCCCCACGCCTCATAGAGGAATCTGCCATTGATGAGGTCGTAGTGACAAACACAATCCCCCACGAGATTCAGAAGCTGCAGTGTCCGAAGATCAAGACGGTGGACATCAGCATGATCCTGTCTGAAGCCATCCGGCGCATTCACAACGGGGAGTCCATGTCCTATCTATTCCGCAACATCGGGATGGATGACTGAGCCAGGCCCCGGGACGCCTCGACCCGCGGTGCGGACCGAGCGATCTGGACTCTGCACTGAGGCCAAGTCTTCTTCATGGcaaccattttttattttgtttcttttgattttattgCGTTTTAAATCCTCTCTGCTGCAGTGAATTGTGCACAAATTCCAAAAGCGGTATGCCAtagctttatttttgtaatttttttttttttttttgggtcatgatttaaagatttttttttagatgtaccttccacctctctccctccccccttttcattttgattcaCCTTGAGTCTTTTTAAGTTATTCGGTTTCCTATCGGGATCTTGGTAATTTCTTGTTGACTAAGAAGTGCTGCCGGTATTGAGAGACccaaatctgtgtttttatgctTCTTGAATTCTCGATGAACAGAaggagggggtgggtggggggaaTCTAAAATGCagctgaaatactgaaatgattgtatatatttctgaaaaaacatGACTGAGCCACCTTTGAAATGGGAGGGGGGTGTGCATAGATTGCGACAGTGTACTTCTCGTCTGTGACATTCCAGTAGTGTTGCCTGCACTGCACACTTCCCTGTAATCTCTGTTTGGGGACATTCTcctactttttttcctctccccattttgcttttttataaCCCTGCTCTAAGCTTAGATTCAGCCCGTATCTCCCAAAGCAGTTTCTCTTATGCCAAGCTGTCGATACCAATCCAGGCAACATCTCGTTGTGCCTCCCCAGCGCTCCAGCAGGGTTGATTTTAAGTATAGCTGTCTTGTCGCCACTCTGGCCTGGCAATGCCTGTGCCCTTGGCGTTTGCAGTGGCACGGCTTTTCCAGCTTCTATAGAGTCAGACCCGTTTTCTTCAGTACAAAATGACACGGCATGCTTAAAGCCCATGCCGgtatgctttcatttattttgtttgcatcagTGATTGGCGGAGGGGGAGGAGCTGCTTCCTGTTCCTGGATTCagttctcatttatttatgtggtgCTTCCTTCCTCCTGTTCGAGGACCTGCTGACCCATGGCTGGCCCTCTTTCTACTTGATGGTCCTTCACTGTCCAGCTCACCATTCACTCGCACACTGCTACCCCATTACGTAGTGAATATCACTGGCCCACCGACAGCATCGCTGCCCCTAACCTTCGCCGTTACACACTCCCCAACACGGCCAAGTCACCCGGCTGTCCCTCACAGTCCAATCTTTCAGTCGTACAAACTTCACAGCGGCTCCCCCTGCCTGGCCACTTAGTACACTAGAAAGCGAAACCTTCCAGTGGAAAACCCCCGAGCGCCCTGAGGCACAGACGTTCGCCAGCAATATGTTTTGTTGAAATGACACTTCttattcctcttttttttgCCTCCTCTTGTTTTTTCTCATGGGTGGCTcttcacacatttacatttaatgtctGATGGTCCAGAAACACTGACATAGCCTATAACACTGTCCCTAGCTGTCCTTACCGTTACAGAGGGTTTAACACCCCAACACCGTTCCCAGTAGTCCTCCACGGTTCACAGCACTGTCTGCTCCGTTATATATGCCTTCACAAGCTCGGCCCGGGCGCAGGTGCTGGTTCCCTGGCTTGTTGTAGTGAAACCGCTTTTAGTTGGAACTTTTCTGACAACTGTGTCATCATGCCTTTAGACTTGCTATACAGTAAGAAATTCAgaatttattactattatgatttattttttaaacggaCACAAAACTGGAAATTTATAAGGGATGAGCAAAGCTAAGCCTTAGAATCATGTTTGAAAAATACCTAACTATATGAAGGGATTGTTTGCTGACTTCTAGTGAAAGTAGACTTGAGATGCATTTTTAAGTTTGAATGACAAGATCCTCACACACCACCGCGCCCTAACAAACAATCCAGAGAAAGAGAGTGCTCTAATTTTCTCCTTTTCTGGTTCAGACCTTGCTCTGGTCATTCTCATCCCGTTTTCAGTGCAAGTTACTCATCGGAGAAGGAGCGAGACCCTCCTCTCCATGCTGTGAAATGAACTGTTGGGTTGAGAAGTCCATtttcacagtgtgtgtgggttAATGGATCATTGTAGTGACAATTCAAGCTTACAGggataatgaaataaaagcagtttgtatgtgattaaaagaagaaaggaagaaaaaaaaaaacgcttttgtatttattttctgcaaacgaggacaaaagtgaaataaatgaaacttTCTCAGAGGG

Function

GO:

id name namespace
GO:0009165 nucleotide biosynthetic process biological_process
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146128 lncRNA upstream 169979 12287569 ~ 12319488 (+) True G116667
TU146114 lncRNA upstream 210627 12278430 ~ 12278840 (+) True G116654
TU146113 lncRNA upstream 215971 12272589 ~ 12273496 (+) True G116653
TU146053 lncRNA upstream 347332 12139002 ~ 12142135 (+) True G116603
TU146052 lncRNA upstream 349386 12139002 ~ 12140081 (+) False G116603
TU146185 lncRNA downstream 43491 12543545 ~ 12588656 (+) False AMCG00018498
TU146210 lncRNA downstream 200447 12700501 ~ 12700765 (+) True G116725
TU146213 lncRNA downstream 379532 12879586 ~ 12883914 (+) True G116728
TU146255 lncRNA downstream 405046 12905100 ~ 12958552 (+) True G116765
TU146256 lncRNA downstream 405046 12905100 ~ 12919130 (+) False G116765
AMCG00018487 mRNA upstream 176653 12293977 ~ 12312814 (+) True AMCG00018487
AMCG00018483 mRNA upstream 218840 12235011 ~ 12270627 (+) True AMCG00018483
AMCG00018482 mRNA upstream 287371 12195542 ~ 12202096 (+) True AMCG00018482
AMCG00018481 mRNA upstream 302139 12186690 ~ 12187328 (+) True AMCG00018481
AMCG00018477 mRNA upstream 325660 12151389 ~ 12163807 (+) True AMCG00018477
AMCG00018491 mRNA downstream 2969 12503023 ~ 12520331 (+) False AMCG00018491
AMCG00018492 mRNA downstream 30504 12530558 ~ 12539267 (+) True AMCG00018492
AMCG00018498 mRNA downstream 80388 12580442 ~ 12611879 (+) True AMCG00018498
AMCG00018497 mRNA downstream 119306 12619360 ~ 12648880 (+) True AMCG00018497
AMCG00018500 mRNA downstream 214053 12714107 ~ 12738068 (+) True AMCG00018500
TU146017 other upstream 518689 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 2876549 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2925063 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3247652 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 3287881 9199657 ~ 9201586 (+) False AMCG00018358
TU146176 other downstream 15749 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 753289 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 807844 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1519874 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1546205 14046259 ~ 14049153 (+) True G117033

Expression Profile