RNA id: AMCG00018497


Basic Information

Item Value
RNA id AMCG00018497
length 3646
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00018497
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12619360 ~ 12648880 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcgagtgtctgtctgtccgccATGTTGGATTGCGTGGGTGCCACACAGACACGGACGAGTGCGACGGGAGACGCGCACAACGACACAAGCCCCGGCCGCACGCTGGAAAAAGAGCTCCAAATAAGACCACACAATCGCTCTTTTCCTCCTCCGTTAACAGCCAGAAGTTAGGCAGCTGTCTCCCCGGGACGAGGACTAATCCCTCTCCTCACAGAACAGACCTGGTAATGGAGGAACTCAACGCATCGGCTGCCCTCTCTGTGTGGAAATGGTTTTAACAGGTGCTGTACTGGAGACTTAAGGAATACGGCTTTTTGGTGGTGTGGTGGCTGAGAAATAGCACTGTGAACACATTGTGGACTtacctctccccctccccctcccctccccccattttctttttcatttgttttgtaacatcCAATTTTTATCTGTCAAAaacgttaaaaaaaacaaacaccaagaTGCCAAGTTCCTCGATACGGCggcaaatgaaaaacattgtgaaCAATTACTCCGAGGCCGAGAAGAAGGTGAGGGAGGCCACCTCCAATGACCCCTGGGGCCCCTCCAGCTCCCTGATGTCGGAGATCGCAGACCTCACGTACAATGTGGTGGCCTTCTCGGAGATCATGAGCATGATCTGGAAGCGGCTCAACGACCATGGCAAGAACTGGCGCCACGTCTACAAGGCGCTCACCCTGTTGGATTACCTGATCAAGACGGGCTCGGAGCGGGTGGCCCAGCAGTGTAAGGAGAACCTCTTTGCCATCCAGACCCTCAAGGACTTCCAGTACATTGACCGCGATGGCAAGGATCAGGGCATCAACGTGCGCGAGAAGTCCAAGCAACTAGTCTTCCTGCTGAAGGATGATGATCGGCTGAAGGGCGAGCGTTCCCAGGCCCTCAAGACCAAGGAGCGCATGGCCCAGGTGACCACCAGCGTCGGCAGCAGCAACCAGATCAACTTCGGCCGCGGCTCCAGCCAGCCCAACCTCTCCACTAGCTACTCTGAGGAGTACGGCAGGTCCGGAGGCTCCCCTGCCTCCTACCATGGCTCCACATCCCCGCACGCGTCCTCcgagctggagcaggcccggCCACAGACCACTGGTGAGGAGGAGCTGCAGCTCCAACTGGCACTCGCCATGAGCCGTGAGGCAGCAGAGCAGGAGGAGAGGATGCGCCGCGGAGACGACCTCCGGCTGCAGATGGCCTTGGAGGAGAGCCGCAAGGACTCGGGCAAGGGCggcaagaagaagaaagagTCGGCTCTCATGGACCTAATGGATGCCTTGCCTGAAGCAGAGCAGGCCCCAGATCCCTGGGGGGGAGCAGCAGCTGCGGCAGCGGCTGCTTCCGCCCCAGACCCCTGGCAGTCTTATGGTGCTGTTTCTAAACCAGCCATCTCTGTTGATCCATGGGGTTCGTCCTCTGCCTCAGCGACCCCAATGAAGAGCGCTGACCCCTGGGGGTCTCCTGCAAGCTCCACCCCCCTGGCTCAAGCAGCCCCTGATCCCTGGGCATCTGGGCCTGCCAACCGCCCCAAAAACACCACCACAGGCAACTTTGATCCCTTCAGCACACTAAATGGTACTTCCAAGGATGACTTTTCAGACTTCGAGAGTCTGCGTTCATCTTCCATGATGCCAGCGAGTCCAGTTGCGGACCCCACAGGGAAGGTGAATGGTTTTCTTGTTGAAGGTGACGCCCGCGGGAGCTCCTCCTTACCCTCGCGACCCGGCGCGTCCGCCAGTCCTGACCTCTTCGACTCTTCTGGCCTGAGCACCAGTTCTCGCAAAACCCCCGAGTCGTTCCTGGGCCCCAACGCTGCCCTGGTCAACCTGGACTCGCTCGTCACCAAGCCAGCGCAGCCCGCTCCCGTCTCCAACCCCTTCCTCGCTCCAGgagcgCCTCCTCCAGCCCAAGCTCAGGTCAACCCCTTCCAGATCAACCAGCCTCAGCCACCAACTCTAAACCAGATGCGAGTCAGCCCCATGATGGGGATGAGCTCCCAGGGCTTTGGCACCATGCCCTCCATGAGCTTGGAGCCCCTGCCCCTTTCCTCGATGCCTCCGACCGGCTCAGTGGCCATGGTCCCGATGCCAGGAATGGCTGCCCTAGCACCTATGGGTCGGATGATGCCGGGCATGGGGATGGGGATTCCCAGCTCAGTGCCGCAGCCGCTCATGAGCACGGGGATGCCGCCAGCTGCAACCATTGGCCAGGCTGGCAGCACTACCAACCCCTTCCTGCTGTGAGGAGTGCTCTGCGCTGTTCCCATCAGAGACATATGCCTCTATATTAGCTAACAATATAGTGGTCtgttttcagattattattttttccctcttttctgTGGAGTGCTATTTTATTAAGACTTTTGGAGTAGATATGgtgtttacagtttttaattggCAGAAGTTGCTCTCTGCTCCCTTGGAGGTAGGTACCCTGCAGTCATTCATATTTCTCCTAAAATCTCCTGAAATGAAACCTttgtaattactgtgtattgtaAGTGTGATTATCCTCTTACCCTCAAGTACATAACAGCTCACTAAAAGCTGGCATAGTATTTACTGGGGTACCGAGTTTAAACTCTAGATTGCTTTAATCCtatccgttttttttttgttttttttaatgggaatcCTGCTCCGTTTTATTCTGTACTTTAAAGTCTTTAAAGGCAAGATATTCACTAAAGCTAACTTTTTTGCCTCCATTTTAGTTTAATGAAAGTAACCTAACATTCTGCATCACTGcatatacactgtatttacGGTATGCGTTTGTAGACACAGTATAGAGAAAATGAATCAgtttacatttaatgtgtttggTGTTCTAAGCAGGGATTTTGCACAAGCTTTAGTTTTCTGACTGTTGGTTCACCATTAGTCCTTagctaaagaaaaacaatgaccGACTGTTCTCTAAGGAGTGGCATCAGTACCAAGTATCAAATCACACGTGCTGAAGTCTGCGCTCTTACTGCTTAGACCATTCAAGCAGCACCGGGGCTTCTTGTCACGGGTTCCAATCTTGACATATTGGAGGAAGAACTGTTACGAAACGACAGGGAGACAGGTTCACACATTGTGAGGATGGCTTTTCGTTTTGACAAAAGCCATTGTTTTTTTACTGCATACAATCTGGAAAAACCAACATTTGAATTCGGTAAATAGTTTGATTTGAATACTATTGTAAGGCTCACTCTTtgcacagtttttatttttgttagggTGACACCGTTTTATATTGACCGAATTGATAGTCTTTTAAATTCGCATTCAGCTGCCTAGACTCTTAAAATGCTGTTAAAATGAAATCTCCAACAATCGAAGAtttgttgtctttgtgttgATTTTAGATGCTGTTAATTTATATGTAGAAAATGTGTTCATTGTCATAGGAAGAGGGACAAAGGGAAACCGAGggggaaatgcaaatgtgttaaacagATGAGCTTCATATTGCAGCAGGTCTTCTCATGTCTTGCGTCATATCGCCACCTTCACATATAACGGGTGTTAGTGTGATTATAATGCATTGATTCAATTCTAAAGCTTTAAAATCCTGTAGATACTAATCCTCTgatctgaaatgttttatatatatatatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K12471 EPN; epsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146185 lncRNA upstream 30704 12543545 ~ 12588656 (+) False AMCG00018498
TU146168 lncRNA upstream 119312 12496794 ~ 12500048 (+) False AMCG00018493
TU146128 lncRNA upstream 299872 12287569 ~ 12319488 (+) True G116667
TU146114 lncRNA upstream 340520 12278430 ~ 12278840 (+) True G116654
TU146113 lncRNA upstream 345864 12272589 ~ 12273496 (+) True G116653
TU146210 lncRNA downstream 51621 12700501 ~ 12700765 (+) True G116725
TU146213 lncRNA downstream 230706 12879586 ~ 12883914 (+) True G116728
TU146255 lncRNA downstream 256220 12905100 ~ 12958552 (+) True G116765
TU146256 lncRNA downstream 256220 12905100 ~ 12919130 (+) False G116765
TU146261 lncRNA downstream 284060 12932940 ~ 12934564 (+) True G116769
AMCG00018498 mRNA upstream 7481 12580442 ~ 12611879 (+) True AMCG00018498
AMCG00018492 mRNA upstream 80093 12530558 ~ 12539267 (+) True AMCG00018492
AMCG00018491 mRNA upstream 99029 12503023 ~ 12520331 (+) False AMCG00018491
AMCG00018493 mRNA upstream 119306 12489467 ~ 12500054 (+) True AMCG00018493
AMCG00018487 mRNA upstream 306546 12293977 ~ 12312814 (+) True AMCG00018487
AMCG00018500 mRNA downstream 65227 12714107 ~ 12738068 (+) True AMCG00018500
AMCG00018501 mRNA downstream 135811 12784691 ~ 12819143 (+) True AMCG00018501
AMCG00018502 mRNA downstream 187344 12836224 ~ 12878881 (+) True AMCG00018502
AMCG00018503 mRNA downstream 236307 12885187 ~ 12904501 (+) True AMCG00018503
AMCG00018507 mRNA downstream 285716 12934596 ~ 12943295 (+) True AMCG00018507
TU146176 other upstream 99479 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 648582 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3006442 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3054956 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3377545 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 604463 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 659018 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1371048 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1397379 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1492497 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile