RNA id: TU146185


Basic Information

Item Value
RNA id TU146185
length 1638
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00018498
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12543545 ~ 12611879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCCTATCCTTGTTCCCCACATCTTTATAAATCTCAGGTACAGAATATGAAAACGGTATCCACAAACATCTTTACAGTAATGTCTTTTGTGCTTGAGTAGCCAGTGAGCGATTACTTCCCCACACTGAAGTATAACCATCCAGTATCACCATTCATAGCAATGGAGCATGAGTCTTAATACCATTGGGGTGAAGCGGTTCTACGATTCTGCATTGCACATTGAACAAAAAGCTGGTGTCCTACTTTAAATGGCAATTACTAACATACTGCCTTAAAGGAAATCCATGCGATGCTTGGAAACAGATGAGGGAGACTGGAAGTTTACTTGCACTTGAACGTGCTTTAGTTGTGTTTGCACAGATAGGGAACAAATAACAGTTTCTCCTGTCTTAGttgacacaaaagaaacacaGTGCTATCCAAAGCTTATGTACGGTTCCAGAGCTGGACTTTAAAAACAGTAGTTCATATTGTATAGGATGATAATACTTATTGCACGCAGGAGTTTGCAAAGCCACTGAAAGCAATGGAATTAGTTACTAGAGATATTTGTTTGCATGAAGAGCTATAATACAAGTGTCTCACATGTGCCTGTCTCCGGATGTCGACACTGCctgtgtttttcatatatatccATCTCCTAAAACAGAGATGTCTCCTCTCACTTGCTATGACTGAGCCTCCTGTCCCGCCAACAGGGGCTTTAGTGTCTAATCAACAGAAAGATGTTTTGACAACAGGATGtttacttgaaaaaataaaaaatgaaatgcacaggAGATTGCGATCTTCAGTGTTTTCTAGTTAAAAATGCAGTGGTTTCAGAGACCACAGCCCTTTTCTTTTGACCTCCTCCTCCCACctgtagttttttatttttatgttacgttgtcagtgcagtgtgcagtgggTGTGAGGGTAGCCATGAGATGCTGAGAAACGAATATGGATAAATCCCAGGGGAGGAAACTGTCTGCAGTCACATGCATATCACAAACTCTTCAGAGCAAACACTTTGTTAGCAGGGGAGTTTTATAGAGACGGCCCAACCCCCACTTCCTGTTGGGACAATGGTGTTGACTCCCCTCCTTTTACTTCAGTTTCCTTGTGCATTATTCTTGTGTGCATTTTCCACTCAGTTTTTCTTTTAGAGATTGAAGAGTCTCCATCTCTAAAACCCTCTTGGTCTCTTGATCTTCCTGTCACCCTACCACAACAGCTCTCTCTTCCCCACGGCCATGGATCATGCTTTTGCTAACCATTGGTGTCCCTGTTACTGTATACATGTAAGCCAAGTCTGAAATGAAACCAGGTGGATTTGGGCATTAAGGGAATAACTGACTGAATTCTCTCTCCTGTTGGGCCGTCAGGGGGGTGGTTCGGGGGCAGGGTCAGTAGTAGATGGGCTGGACATATTCGGGAGGGAAGAAGCCCACGCGGCCATGGCAGCGGCCTTTCCAGCGCTGAGTGTCCGAGCAGTCAAGGAGATCGATGATGTCATCGCGCATGAAGTGCAGCTGGGAGACGTGCTGAGGGGTGAAGTCGAAGAGTGCCCGGGCATGACGTGGCCTCTAGGGGGAGACAAACAGAAAGCAACACCACAACAGAGGTCCTGAATCAGCCCCAGATGAGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146168 lncRNA upstream 43497 12496794 ~ 12500048 (+) False AMCG00018493
TU146128 lncRNA upstream 224057 12287569 ~ 12319488 (+) True G116667
TU146114 lncRNA upstream 264705 12278430 ~ 12278840 (+) True G116654
TU146113 lncRNA upstream 270049 12272589 ~ 12273496 (+) True G116653
TU146053 lncRNA upstream 401410 12139002 ~ 12142135 (+) True G116603
TU146210 lncRNA downstream 111845 12700501 ~ 12700765 (+) True G116725
TU146213 lncRNA downstream 290930 12879586 ~ 12883914 (+) True G116728
TU146255 lncRNA downstream 316444 12905100 ~ 12958552 (+) True G116765
TU146256 lncRNA downstream 316444 12905100 ~ 12919130 (+) False G116765
TU146261 lncRNA downstream 344284 12932940 ~ 12934564 (+) True G116769
AMCG00018492 mRNA upstream 4278 12530558 ~ 12539267 (+) True AMCG00018492
AMCG00018491 mRNA upstream 23214 12503023 ~ 12520331 (+) False AMCG00018491
AMCG00018493 mRNA upstream 43491 12489467 ~ 12500054 (+) True AMCG00018493
AMCG00018487 mRNA upstream 230731 12293977 ~ 12312814 (+) True AMCG00018487
AMCG00018483 mRNA upstream 272918 12235011 ~ 12270627 (+) True AMCG00018483
AMCG00018497 mRNA downstream 30704 12619360 ~ 12648880 (+) True AMCG00018497
AMCG00018500 mRNA downstream 125451 12714107 ~ 12738068 (+) True AMCG00018500
AMCG00018501 mRNA downstream 196035 12784691 ~ 12819143 (+) True AMCG00018501
AMCG00018502 mRNA downstream 247568 12836224 ~ 12878881 (+) True AMCG00018502
AMCG00018503 mRNA downstream 296531 12885187 ~ 12904501 (+) True AMCG00018503
TU146176 other upstream 23664 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 572767 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 2930627 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2979141 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3301730 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 664687 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 719242 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1431272 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1457603 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1552721 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile