RNA id: AMCG00018506


Basic Information

Item Value
RNA id AMCG00018506
length 2299
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00018506
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13033006 ~ 13043686 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTGGAAAAAGACACTAGACCAGAGCCCGGCATTGTACGCCTACATCAGTCTGCATGACGAGCAGCATTTTGATTatctttctgtttcagttaaagtACCCCTGCAACAATTTCTATTGTCAGCCTATTGCAGCAGTTATCGGGGTGGAGGAAATCCAAGGACATGATGACATTGccgtttgtatttttcttttcctatttTCCAGACGATTTGTGCATGTCTGAGTGATCGCCCATCCCCAGCTATGATCTTCGGAGACGTTTTTTCTTCGCTGGCGTGCTTCGGTGGAATATAATGTTTTCTTCGACTGTTAAGTGTTGGGTTTAGCGGTTGCTATGGATGAGCAAAAAGCGTAAATCAGTTTCTTTGAGCACGCGCGGAATGAGGAGCATGCGCGTTTGTGCGGCTGGGTTACACGAGTTTATTTCTGCTCCTCGTTTTTCTGCAAGTGGCTTTAAATAAAAGCGGTATATTGTAAATATCAATACCGAGTTGTTAATCTAATTACCGGACTTAGATCCGTCGGCGGCTGTCCGGTGGGGTTGTACTTTCTTGCCGCGAGACTTGGCAGTTAACTGCCGCTACGCAAAACACATTGTCAAGCCGAGGATAACGTTACGACTTGTTACATCTTATATATGGTGTGTTTATTGCCAATATTTATGAccgttattgttattattagcattTGAATAAATACGACTTGCAAACGTTTGTTGGTGCTCAGGATGTGTGGTGACTAAGTCAAATTCATTTCAGTTTCTATCAGGGTAGCTATACGTTTATCGTGACTTCCACGCAACAcaaaaaatagatgttaaaaTGTCAGCGAGTGTAAGTATAATACTGGAGGAGCGAGTTGTTTCCGAGTCGCCGCAGTAGCAAAGCGCAGTCTTTAGTAGCCCTGTCGTTCAGAAACAAAGTGCACGATTGTTTGATGCCCCAGAGAAACTGCTGGCATCGCGTCACTGTCAATCAGTGGTTCCACGCAAAGCCTGTGAAATATGGGAAAGAAATACCGGTTTTTTTAAGCGCCCTGTATAATCTAGGAAAATGGCAGCAAGTGGCTATACCGACCTCCGAGAGAAACTGAAGTCCATGACCCCCCACAGAAACAAAGTTTCAGAGCAAAGCAATGGCCGCAAGCGAAAGTACCACGACTCGGAGGAGGACTACAGCGACTACGAAGAGCAGCGAGAGGTGGAGGCCCGGAAAGTTAAGACCGGCATCCGGCAGGTGAACATCTTCAGCCCGGAGGACTGCGCTCTGATCGAGGCCAAGATCGACGAGGTCGTCTCGAATGGGGAGAAGGGCCTCTATCGGGAGCACACGGTGGACAGGGCGCCCCTTCGGAACAAGTACTTCTTTGGGGAAGGCTACACTTATGGATCCCAGCTGGAAAAGAGAGGACCGGGGCAGGAGCGGCTCTACTCTAAAGGGGAAGTGGACGACATCCCCAACTGGGTCGACGAGTTGGTGATAAAGAAACTGGTTGCCAACCGGGTGATCCCCGAGGGCTTTGTCAACAGCGCCGTCATTAACGACTACCAGCCCGGAGGTTGCATCGTGTCCCACGTCGACCCGATTCATATCTTCGAGAGGCCCATCGTGTCCGTGTCTTTCTTCAGCGACTCGGCGCTGTGTTTCGGCTGCAAGTTTCAGTTCAAGCCCATCCGAGTGTCCGAGCCGGTGCTGTTCCTCCCGGTGAGGCGAGGCAGTGTCACTGTGCTCAGTGGTTATGCAGCAGATGAAATTACCCACTGTATTAGACCACAGGATATCAAGGAAAGAAGAGCTGTCATCATACTGAGAAAAACAAGACCTGATGCACCAAGATTGGAAACAAAGGCACCAAGTAATGCAGTTCCTCCTGTTTCCACTCCTGAAAGTCCTCCAGTATTAAAACCAAAGCGATCTCATCGGAAGGCAGACCCTGATGCAGCTCACAGGCCACGCATATTGGAAATGGACAAAGAAGAAAACCGGCGCTCTGTTATTTTACCGAGACACAGACGAAGGAGTGGCTCGAGCTCGGAGAACCTTTGGAGGAGATCCTATGAGGCCGCAGGCAGCAGCGACGAACCTGACGATAATGCCAGCTCGgcaagaaaagtaaaaatgagACGCCACTGAGGGAGGCAATCCAAACAGGGACACGTATTCTCCAAATATAGATAGCTGTTTTGGAGGCTTCAGTCTTTTCTTTGCATGCAGGTGTAGAAGTAGTTGGTATACATCAGCTACAAAGTtggccacttttttttttttttttgctggttgtggctggagagggagag

Function

GO:

id name namespace
GO:0035553 oxidative single-stranded RNA demethylation biological_process
GO:0006397 mRNA processing biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0007283 spermatogenesis biological_process
GO:0001666 response to hypoxia biological_process
GO:0016607 nuclear speck cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0035515 oxidative RNA demethylase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10767 ALKBH5; mRNA N6-methyladenine demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146255 lncRNA upstream 74454 12905100 ~ 12958552 (+) True G116765
TU146261 lncRNA upstream 98442 12932940 ~ 12934564 (+) True G116769
TU146256 lncRNA upstream 113876 12905100 ~ 12919130 (+) False G116765
TU146213 lncRNA upstream 149092 12879586 ~ 12883914 (+) True G116728
TU146210 lncRNA upstream 332241 12700501 ~ 12700765 (+) True G116725
TU146267 lncRNA downstream 3431 13047117 ~ 13048094 (+) True G116775
TU146286 lncRNA downstream 86052 13129738 ~ 13215352 (+) True G116790
TU146409 lncRNA downstream 322954 13366640 ~ 13367028 (+) True G116882
TU146490 lncRNA downstream 622337 13666023 ~ 13691367 (+) True G116941
TU146532 lncRNA downstream 796030 13839716 ~ 13839971 (+) True G116975
AMCG00018508 mRNA upstream 1218 12958712 ~ 13031788 (+) True AMCG00018508
AMCG00018507 mRNA upstream 89711 12934596 ~ 12943295 (+) True AMCG00018507
AMCG00018503 mRNA upstream 128505 12885187 ~ 12904501 (+) True AMCG00018503
AMCG00018502 mRNA upstream 154125 12836224 ~ 12878881 (+) True AMCG00018502
AMCG00018501 mRNA upstream 213863 12784691 ~ 12819143 (+) True AMCG00018501
AMCG00018511 mRNA downstream 43775 13087461 ~ 13088726 (+) True AMCG00018511
AMCG00018510 mRNA downstream 56917 13100603 ~ 13123386 (+) True AMCG00018510
AMCG00018509 mRNA downstream 118971 13162657 ~ 13166145 (+) True AMCG00018509
AMCG00018514 mRNA downstream 144237 13187923 ~ 13196197 (+) True AMCG00018514
AMCG00018516 mRNA downstream 191515 13235201 ~ 13237686 (+) True AMCG00018516
TU146176 other upstream 513125 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1062228 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3420088 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3468602 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3791191 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 209657 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 264212 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 976242 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1002573 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1097691 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile