RNA id: AMCG00018515


Basic Information

Item Value
RNA id AMCG00018515
length 2588
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00018515
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13246534 ~ 13252245 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGATTAGTTCTGCCTGGCGGGTCATAGTTCAGAGTTCAGCTCTGGAGTGTTTCTGCGAGAGCGAGGATCGTATTGGGAAAAGAGggagaatctttttttttgaaGCTgtattagtgtttgtttgtgtaaacgTTTAAGTTtatagttattgttttatttgattatcgTTGCAACCGAGTAGTGAGTCCCTTATATTACAGCAAACATGCAGGAGTTGATCGCCACCGTGGATCACATTAAATTTGATCTGGAGATTGCTGTGGAGCAGCAGTTGGGGGCTCAGCCCCTGCCATTCCCGGGCATGGACAAGTCGGGGGCCGCCGTGTGCGAGTTCTTCTTGAAGGCTGCGTGTTTGAAAGGAGGCATGTGTCCCTTCCGTCACATCAGCGGAGAGAAGACTGTGGTCTGTAAACACTGGCTGCGAGGGCTGTGCAAGAAGGGGGACCAGTGTGAGTTCCTGCACGAGTACGACATGACCAAGATGCCCGAGTGCTACTTCTACTCCAAATTTGGGGAGTGCAGTAATAAGGAATGCCCGTTCTTGCACATTGATCCGGAATCCAAGATTAAGGACTGTCCCTGGTACGACCGAGGATTCTGTAAACATGggCCGCTGTGCAGACACCGGCACACACGCAGGGTCATCTGCGTCAActacttggttggtttctgtcCAGAGGGCCCCAGCTGTAAATTCATGCATCCTCGTTTCGAGTTGCCAATGGGAACAACAGAGCAACCTCCATTACCCCAGCAACCACAGACACAGCAAAAGCAAAACATTCAGCCCATGAATCAGCGGTCTTCGTCGCTGATCCAGTTAACCAACGCCAGTTCCAACTCCAACCACCAGAGAACGCCGCAGGTCATCGGGGTGATGCAGTCGCACAGCACCCCCACTGGGAACAGGGGCCCCCGGCCTCTGGACCAGGTCACCTGTTACAAGTGTGGCGAGAAGGGGCACTATGCTAACAGGTGTACAAAGGGTCACCTAGCATTTCTGAGTGGACAGTAATTTCCTGGACTACGCTCAGATGGAGGAGTCGCAGAAAGGAACGACGctgcaatgtctttttttttttttacccaaacCGACTTAGTCCAATTGACAGTGGATTAGCAACACTCGGCTCTTCACTTATGTGCAAAATCTAACTTGGAGAACGTCTCGTATTATACTTGTATCTCTTTAGAGGGGTATGACAGCCAGTTATACTGGAGGTATCTGGTGTATAGCCTAGAGCTACAGCTGATCAGAAACagttatatacatacacatccCCCACACCATGTGGAATGAGAACCAGTTGTTATGTGGAGTTCATTGCATCTTATCCCTCGACTGGCTTAAAGCTTAGAGCAAAGGAAATTTAATATGCTTATCTCTCTCCACAAGGCAGAAAAAACCTGCAATATACCAGGATAATCAATGTCTTCAagtgattttaaacaaaattaaaatcccaACTTTGAACAAGCTGATCAAAATGGGTTGAGAAGCAATAGTtacttaaatgttaaaattgaatTCTTAGGGTTTTGCTGAAGTTCACGTCCCTGCTTTACACAACATACTTGACTGACATGTAGAAGATGCTGTTGAGAAAGTGTTACAAAAATAGCctttagattgtttttctttttcacttggCTTTAACTTGCCATtgctttttaagtttgttttaaacccTGACCACCATTTGGAATGAATTCTGAGGCACTGGTGGcctcattgtttttttccccctcttctttttaatgttttaatttgacataCATTGACACCAGGTTTGTAACTGGAAAGCTGATCATTTTGAGTGAAAGTAAGGTATGTTCTTCTGGTGTCTTCTGGTGTCATAACTGCTGAAGATGAAGACTAGGAGAGGTGTCTTCCCAGATCATGGTTAGGTGACTAGGTATTTTTATCAGCTTTCAAAATTGTCCTTCAAGAACAGAAATAGTTCAATTAATTTAGAATAGAAACCTGCAATGAGATTTTGCTATATAATGTAGTATGCAAACGTTTGGGTGATGTTTTCTCTGCGTGAGGTCATTTAGAGTATTGCTTTCCTGCAAAAACATCAGACCTAAGCATCCTCTGAGGCTGTCTTGTTTAACATTCATTGAATTGACTTTTCCTTTTCACAGCTTTTCCTGTGAAGTTCATTTTCCTGTCAGTCAGTTCAGGGCTCCGGTGGTTGTGAGGTGAGGTCTGTAGGCCAATCAATTTAAATTGCAGCAATGTAAAATGGGAGAATGCACTGAGCCTGATGTCTTGCCAGTTTTCTCAATTATTGTAATGATCCAAATTAATTCTATGTATATATGAACTGTGTAATGATTGGATGGAAAGTTCAATGTGGTGCAGAATGGTACAGGCTGAGGTGAAAAGTGCCTGCAAAgcgagattttttttttatgtacagtgTCAGCAGCAGGTTAAGGGGTGGGCCAAAACAGCTTGTTGTTTcaactttttaataaaacaacattgtgaaatgattctgtatttcttttgatAAAGctgtttaatgtatgttttgtatcataaccatgagaaataaaaatcacttATTTTGCACATGG

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14404 CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146286 lncRNA upstream 31182 13129738 ~ 13215352 (+) True G116790
TU146267 lncRNA upstream 198440 13047117 ~ 13048094 (+) True G116775
TU146255 lncRNA upstream 287982 12905100 ~ 12958552 (+) True G116765
TU146409 lncRNA downstream 114395 13366640 ~ 13367028 (+) True G116882
TU146490 lncRNA downstream 413778 13666023 ~ 13691367 (+) True G116941
TU146532 lncRNA downstream 587471 13839716 ~ 13839971 (+) True G116975
TU146533 lncRNA downstream 594645 13846890 ~ 13847092 (+) True G116976
TU146591 lncRNA downstream 768398 14020643 ~ 14022806 (+) False AMCG00018537
AMCG00018516 mRNA upstream 8848 13235201 ~ 13237686 (+) True AMCG00018516
AMCG00018514 mRNA upstream 50337 13187923 ~ 13196197 (+) True AMCG00018514
AMCG00018509 mRNA upstream 80389 13162657 ~ 13166145 (+) True AMCG00018509
AMCG00018510 mRNA upstream 123148 13100603 ~ 13123386 (+) True AMCG00018510
AMCG00018511 mRNA upstream 157808 13087461 ~ 13088726 (+) True AMCG00018511
AMCG00018520 mRNA downstream 69105 13321350 ~ 13346877 (+) True AMCG00018520
AMCG00018523 mRNA downstream 216648 13468893 ~ 13534827 (+) True AMCG00018523
AMCG00018526 mRNA downstream 387478 13639723 ~ 13649092 (+) True AMCG00018526
AMCG00018527 mRNA downstream 530469 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018530 mRNA downstream 607650 13859895 ~ 13878065 (+) True AMCG00018530
TU146176 other upstream 726653 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1275756 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3633616 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3682130 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 4004719 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 1098 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 55653 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 767683 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 794014 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 889132 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile