RNA id: TU146394



Basic Information


Item Value
RNA id TU146394
length 1103
RNA type TUCP
GC content 0.46
exon number 4
gene id AMCG00018520
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13307898 ~ 13346877 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AATAACCAATTTTTCAACAAGTGGTTTAACAACACTGAGATCTTTTCTCAGCGTTCTCCttcaaaaatgaatattttcatTGAATCTATATAGTAACACGAAATGACCTAGTCACTGACAGTGCACATTTATCTACTTTTATCTGTATTATATTGAATGGACCATATCATTTGGAAGATTGTCATTTGACATGCTATGTAGAGAGATGTTATTTGCCAAAGCTTTTGAAAGGGTTTAGTTGATATCAGTATCCTTAGAGACGCATATTGATAGAAAACGTGAATTTTCCCAGTCAAACCGCTGGTATATGCTTAGATCCCGCGAATGCTTGGGATTCAACCAAAGCCcctttaaattgaaatgctaGCAGTTTGAGTCGGGGCTAGTGGAGACGGCTGTGTGgagcaggaggcaggaggcTGTGCAGGCGGCGCACTTTGCTTTTGCACCTTGCCTGCAAAGGGGACGTAGCAGCCGCAGACCTCTCTGATGGATGGGACTCACCCTCTGAAGGAGAGATGGCAAACGCGATAATTTCTCCGATTTTCTTTTAACGGGATGAAATCTTAACCAATCCAACGGATTCGCTACATCTACAAAAGGTGTCCTGAAGAACCCTCACCTCCTGTTGTTTGTGGACTGAGAGAAGCAAGGCCtagagtaagagagagaaagagggaaccGGCGCCAGGATGGGCTCTGTTGGAGTGGAGAGACGTAAGCAGGCCACTCCGGCCCTCACCCCCGAGGGGAATGTAGTCATGAGCTTCAGCTTTGAGAGCTACCAGCTGGAGGAAGAGGACAGCCAGGCCAAGGACGTCCCAGACAAAGGTGTGCTAACCTTCACCGAGCCAGCATTTGAAGAACCAGAGCCAGATGACCGTTACCATGGGATCTACTTTGCCATGCTGCTTGCTGGAGTTGGGTTCTTGCTGCCTTACAATAGCTTTATAACTGACGTAGACTACTTACATCATAAATTTGAAGGGACATCGATCGTCTTTGATATGAGCCTTACATATATTTTGGTGGCTCTTGTGGCTGTAATACTGAACAATGCTTTGGTGGAGATGCTCAGTCTTCACACACGAATCACTGTGGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146286 lncRNA upstream 92546 13129738 ~ 13215352 (+) True G116790
TU146267 lncRNA upstream 259804 13047117 ~ 13048094 (+) True G116775
TU146255 lncRNA upstream 349346 12905100 ~ 12958552 (+) True G116765
TU146409 lncRNA downstream 38368 13366640 ~ 13367028 (+) True G116882
TU146490 lncRNA downstream 337751 13666023 ~ 13691367 (+) True G116941
TU146532 lncRNA downstream 511444 13839716 ~ 13839971 (+) True G116975
TU146533 lncRNA downstream 518618 13846890 ~ 13847092 (+) True G116976
TU146591 lncRNA downstream 692371 14020643 ~ 14022806 (+) False AMCG00018537
AMCG00018515 mRNA upstream 55653 13246534 ~ 13252245 (+) True AMCG00018515
AMCG00018516 mRNA upstream 70212 13235201 ~ 13237686 (+) True AMCG00018516
AMCG00018514 mRNA upstream 111701 13187923 ~ 13196197 (+) True AMCG00018514
AMCG00018509 mRNA upstream 141753 13162657 ~ 13166145 (+) True AMCG00018509
AMCG00018510 mRNA upstream 184512 13100603 ~ 13123386 (+) True AMCG00018510
AMCG00018523 mRNA downstream 140621 13468893 ~ 13534827 (+) True AMCG00018523
AMCG00018526 mRNA downstream 311451 13639723 ~ 13649092 (+) True AMCG00018526
AMCG00018527 mRNA downstream 454442 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018530 mRNA downstream 531623 13859895 ~ 13878065 (+) True AMCG00018530
AMCG00018534 mRNA downstream 557508 13885780 ~ 13902661 (+) True AMCG00018534
TU146344 other upstream 52104 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 788017 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1337120 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3694980 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3743494 9562161 ~ 9564404 (+) False AMCG00018372
TU146594 other downstream 691656 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 717987 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 813105 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 860731 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 911226 14239498 ~ 14242037 (+) False AMCG00018551

Expression Profile