RNA id: AMCG00018522


Basic Information

Item Value
RNA id AMCG00018522
length 792
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00018522
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13253085 ~ 13257250 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATCATCAGTTTGTATGTACATGCTAGGAACAGTGGTGCCAATAAAGGAAAGAGAATTTATTTAACACAGGCTACTGGAAAATAACAGCTTAGTGTTTCTGTTGGGGATGGCTGAGAATGGAAGCTGTTTCCCACAAGTCTTAGCGTCAAAGACACACTGTGTAGCAAGATGGCTGATAGACCGGTGCCCATCTCTGAGAGGAGGCTTCTGGAGGTGAAGCTGGGAGAGTTCCCAGCCTGGCTTGGCAGCCGGGACTTTTCTCCCAGTGGAGTCCTCTCTGCCCTTCGCAGAGGGCATGACAGATATTATAACAAGTACATCAATGTCAAGAAGGGTGGCATTGGTGGTATTGCTATGCTTCTGGCAGGCTATGTAGTTGTGAGCTACATCTGGGACAGGGAACATCTTAAGCACGACCGCTGGAGGAAGTACCACTAAGCTCGGGCCCAGGCCTTCTCATGCGGACTACAGTGGCAAGAACAGCATGcccttttttctgtattgtgtacAAAGTCAAGTTTGTgaccaagaaacaaaataaacctatAATGTGTTGTGTAAGATACTTGAGTAACTGGCTTTGAGTCTTTTTTCAGACTATACATATACTGTGTAGAGGTAGCCTTTGTTCCACAgttttcattgatttgttttcatggaTTTCTAAAGAATAGTTTACTAGGATTTATCCATCTCTAATCCTTACATTATAATACTATTGCAGAGTAATTCAGAAACCTGATCTTGAATGACGTATAAAAGTTGCTGTTCTTTGCAAAACGGAACACGA

Function

GO: NA

KEGG:

id description
K02130 ATPeF0F, ATP5J2; F-type H+-transporting ATPase subunit f

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146277 lncRNA downstream 206531 12989436 ~ 13046593 (-) True G116784
TU146236 lncRNA downstream 368702 12879665 ~ 12884422 (-) True G116750
TU146235 lncRNA downstream 376361 12874915 ~ 12876763 (-) True G116749
TU146143 lncRNA downstream 954413 12295461 ~ 12298711 (-) True G116672
TU146140 lncRNA downstream 963196 12287568 ~ 12289928 (-) False AMCG00018490
TU146401 lncRNA upstream 73641 13330891 ~ 13331814 (-) False G116875
TU146402 lncRNA upstream 73641 13330891 ~ 13342748 (-) True G116875
TU146413 lncRNA upstream 109324 13366574 ~ 13367055 (-) True G116883
TU146454 lncRNA upstream 243468 13500718 ~ 13502497 (-) True G116918
TU146468 lncRNA upstream 271446 13528696 ~ 13534836 (-) True G116931
AMCG00018521 mRNA downstream 7393 13238810 ~ 13245731 (-) True AMCG00018521
AMCG00018518 mRNA downstream 18440 13227151 ~ 13234684 (-) True AMCG00018518
AMCG00018517 mRNA downstream 29414 13214592 ~ 13223710 (-) True AMCG00018517
AMCG00018519 mRNA downstream 40529 13203693 ~ 13212595 (-) True AMCG00018519
AMCG00018512 mRNA downstream 65375 13160357 ~ 13187749 (-) True AMCG00018512
AMCG00018524 mRNA upstream 315116 13572366 ~ 13578310 (-) True AMCG00018524
AMCG00018525 mRNA upstream 325854 13583104 ~ 13587070 (-) True AMCG00018525
AMCG00018528 mRNA upstream 391635 13648885 ~ 13727870 (-) False AMCG00018528
AMCG00018529 mRNA upstream 486739 13743989 ~ 13745104 (-) True AMCG00018529
AMCG00018531 mRNA upstream 526603 13783853 ~ 13832385 (-) True AMCG00018531
TU146006 other downstream 1341788 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 2050236 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 2184806 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 2681122 10565795 ~ 10572002 (-) False AMCG00018431
TU145668 other downstream 2867908 10360129 ~ 10385216 (-) True G116307
TU146918 other upstream 1246153 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 1478888 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 2241412 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 2241412 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 3751648 17008898 ~ 17009301 (-) True G117784

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2677803 True 379 lncRNA 0.54 4 NW_023493664.1 1021952 ~ 1024681 (-)