RNA id: AMCG00018528


Basic Information

Item Value
RNA id AMCG00018528
length 2730
RNA type mRNA
GC content 0.48
exon number 19
gene id AMCG00018528
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13645368 ~ 13727870 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGAGGGCATATTCTCCTGGTGGTGACAAGCTGTGGCGTGGACTCTGATGAACTTCactgtggaaagaaaatatatcatCTGGAGGCTGTGCTGCAGCCATGGATACGCGAAGAACCTGGTGGCGGCTCCATATCCCTGGGGCAGGTTGGGTGCAGATACCTTGGGGCAGAGAAGCATGGTGGAAAAGCCCGCAGCGATCTGCTCATTACCATATCGGATGACTCTGATGATGAGCCGCCTAACCTTATACCAAATAATCCAATCCAGATTAAATCGGAGTTGAACGACGAGGAAGACGAAGAGGATGTTGTGATTTTGGAGCCACAAAGATCCCAACAGCCTCTGCGTCCGAACGTTATACGCCCTGCTGCTCCATGGGGGGGGGTCCCCCTGCTCAGAACACTAGAGAGACAAGGGGAGGCTCCCAGAGAATCATCTCTGCACCCTGCGGAGCGGAGGATACTAATTGCACGTCGTCGATTCTCACATAACAACAATGTGGACTTAGTGTCAGGGAAAGAAGCCCTTAATGTCTTAAAAGAAAACCAGAATGCTGCACCTTCCACTTCTACTGCATATCCTGTGCCGAGACCTCAACTGTTGACAAGAAATGAACATGTAGTTGAGCAAGGACTTCCAGGACGTGCTGGGCCTGCTGCTGTTTATAAAGGGGAAGTTTTAATTGCCACAGCACCCGAGCCATTGGTTCCCCTTGAGGCCAGGCACGGGATTGTAGTGGGAACCAGTCCGAATGTGGATGGACTCTTAAATGCCCCAACAGCATCTTACCAGGAGCAGCGTCCTGAACGCGTTCAGATCCACATGGACCAAGTCAGGCAGGTTGGCATGGTTGCCCACACAACTGTGCCACCCCAAGCTCCCTTCCCAGCTCCACCtgaacagcaacagcaagaccTGCTCAAACTTGTTCCAGTTCAAGTTATTCCCAACCACAGGAACCAGGCCCCCCAAGCCCTACACGCCCCGCTAACCGTGATTAAAGATGAGCCACAAGCACAAGTTGATAATGAGAGACCTGGGCCATCTGTCCCAAATCGGGAATTGGGAGCTGTTGGGTTTAACAGAGATCTAATTAACTCATTGGTGCATGGAGTGGCAGAATTTTTTCCTGATGTAGAAGAGGAGTACATTGAAACAATAATTAAGAGGCACAATTTGCAAGACTTAAATTTGATTTGCAACTTTTTGTTAGAAAACCCTGAGTatccaaagaaagaaaggacTTCTGTTTTGAACCCATCGAGTATTCTCCTTGAAACTAGTGATACTGAAGCACAGaataaagaaaattattttgatttctccaAACTGGGACCTGTAGAGCAACGGACGACCATTCAAGCTGCAGATCTGCTCATGGccgattttaaaatgttaagcaGTATGGATATCAAATGGGCTCTGCATTCCCTTAAAGGACACTATGCAATCACACGCAAGGCCTTATCTGATGCCATTAAGAAATGGCGGGAACGATCATCTCCAGTGtctggaaagaagaaaaaacgaaAAGAAATGAACCAGTTTTCCTATATAGATTTCAAGTTTGAACATGGTTCTGCTAAATTTGAGCGGCGTATGTTCTTTCTGGAAAACAAGAGACGACACTGGAGGACATATGATAGAGATTCCCTTCATCCTTTGTTGCAGAATGAGATCAAGTTCTATGAACAGAAAGCTAAAGAAATGGCAGAGCATGAAGATTTCTTGTTAGCTCTACAAATGAACGAGGAGCAATATCAAAAGGATGGCCAGTTGATTGAATGCCGATGCTGCTATGGTGAGTTTGCATTTGAAGACCTGACTCAGTGTGCCGATGGACACCTATTTTGCAAGGAGTGCTTGGTGAAATACGCACAGGAGGCTGTATTTGGTTCAGGACGCTCAGAGCTGAGTTGCATGGATGGTACGTGTACATGTGCGTTCCCCACCAGTGAACTGGAGAAGGTGCTCCCGGAGAACATCCTGTGTAAATACTACGAACGCCAGGCTGAAGAGGCTGTAGCTGCTACCTGCGCCGACGAGCTCGTGAGGTGTCCCTTCTGTAATTTCCCAGCTCTGCTTGATAAAGAAGTCTCTCTATTCAGTTGTCCCAACCCACGCTGCAGAAAGGAAACCTGTCGGAAGTGCCAGGTACTGTGGAAGGATCATGCAGACATGTCGTGTGAGCAGGTGGTTGAGAGGGATGAGATTCGCCTCAGGGTGGCTTTTGAAGAGAAAATGACAGCGGCCCGTGTGAGGAAATGTCACAAGTGTGCGACTGGCTTGGTGAAGTCCGAAGGCTGTAATCGAATGTCCTGTCGCTGCGGCGCCTACATGTGCTACCTCTGCCGAGAGCCCATCAATGGCTACAACCACTTCTGCCAGCATGCCCGCTCCCCAGGAGCGCAGTGCCACCACTGCAAGAAGTGCTCTCTCTGGACAGACCCCACGCAAGATGATGAACGAATAATTCAGGATATTCAGAAGGAGGCAGAAGAGGAATTAAGGAAGAAGAACACGGgaaacaTCAAGTGTGCTTCCAGGAGtAAGAAACTAACCAATGAAGAATGTTTATGTGGCTTTACCCTGGTGGAGCTTCTTTTACAGGATAAAACTCAGGAAAACTCCAGGAAGAAGTCCACCGGGGTGTCACTGCTGCTCACCACAGAAGATTCGTTGCCAACCATCCAGTACTTACCAGTGCAATCTGAGGGACAGAGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146499 lncRNA downstream 28453 13620223 ~ 13620432 (-) True G116949
TU146468 lncRNA downstream 114049 13528696 ~ 13534836 (-) True G116931
TU146454 lncRNA downstream 146388 13500718 ~ 13502497 (-) True G116918
TU146413 lncRNA downstream 281830 13366574 ~ 13367055 (-) True G116883
TU146402 lncRNA downstream 306137 13330891 ~ 13342748 (-) True G116875
TU146570 lncRNA upstream 158439 13886309 ~ 13887367 (-) True G117011
TU146572 lncRNA upstream 159551 13887421 ~ 13890103 (-) True G117012
TU146575 lncRNA upstream 169630 13897500 ~ 13966269 (-) True G117015
TU146648 lncRNA upstream 367421 14095291 ~ 14100107 (-) True G117066
TU146724 lncRNA upstream 504926 14232796 ~ 14233624 (-) True G117122
AMCG00018525 mRNA downstream 61815 13583104 ~ 13587070 (-) True AMCG00018525
AMCG00018524 mRNA downstream 70575 13572366 ~ 13578310 (-) True AMCG00018524
AMCG00018522 mRNA downstream 391635 13253124 ~ 13257250 (-) True AMCG00018522
AMCG00018521 mRNA downstream 403154 13238810 ~ 13245731 (-) True AMCG00018521
AMCG00018518 mRNA downstream 414201 13227151 ~ 13234684 (-) True AMCG00018518
AMCG00018529 mRNA upstream 16119 13743989 ~ 13745104 (-) True AMCG00018529
AMCG00018531 mRNA upstream 55983 13783853 ~ 13832385 (-) True AMCG00018531
AMCG00018532 mRNA upstream 123541 13851411 ~ 13857590 (-) True AMCG00018532
AMCG00018535 mRNA upstream 175749 13903619 ~ 13915955 (-) True AMCG00018535
AMCG00018546 mRNA upstream 293185 14021055 ~ 14036632 (-) True AMCG00018546
TU146385 other downstream 393116 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 1737549 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 2445997 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 2580567 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 3076883 10565795 ~ 10572002 (-) False AMCG00018431
TU146918 other upstream 775533 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 1008268 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 1770792 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 1770792 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 3281028 17008898 ~ 17009301 (-) True G117784

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051945 True 2490 mRNA 0.52 16 NC_007114.7 40605388 ~ 40658820 (-)