RNA id: TU146496


Basic Information

Item Value
RNA id TU146496
length 2836
lncRNA type sense_over
GC content 0.37
exon number 2
gene id AMCG00018528
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13645368 ~ 13727870 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attaaaaataataatNNaaaaaaaaaaaatcaaataaaactcaCTTTTATAAGATATGCAAGTGGAATGTTTCAAAAACTGACCAATACTCTAGGCAAGGCACAACCATTAtcaatttttccatttgtttccataCGTTTTTTGAAAATCACTTCCCACCAACTACCAATTTCCAGTCCAGGGTATGAGATGTCCTTGTGCAGTTCCAGTGAGGTTCATGGCTTTCTTTGAGCACCTACTGTATGTGTAAAGGCACTCCCTTTAGAGTAAATTAAGACTCTTTGGTTAGAGACTACAATGAATTGTAACCATATTCCACAGCACTTGACTTGAGGCCTTTCATTAGATATGAAAAAACTGAATGACATTTGTAGAACCTTAGTGACTGCAGAAATATAGCACCAGGAAATTTTAAGAAAGGAAGGCTGGTTATAGGACATGACTGGATGGTGgcttgttatttgtttaatacagattttattccaaataaagatggagagagacaagGAGAGATGCACAAGAAGAATAATTAAATTCTAAGAAATCTCAATTCCAGGCTCATTCTAGATCACAGTTGGTTCATTTGAGTAAGTATACTGAAGTATTTAAAACTTCACATTTGAAATTCttagcaatttaaatatatagtcaTGGTATAGTTtgtttccccccaccccctttcctTAAACCTCAGGCCATGGTTTTGCCTGTAAACTAATTGTGCTGTCATATTGACggacaacaaacaaatcacgcAAAGTGGTTGTGGGCTGACCCAGCAATATGCAACGCTGTCTCTGCATTGAAATAGGTCATCTTGCAGCGGAGTGGGTTCCAGTTTTTGAATCGGCTTTGCTGTTAAGTTGCttaagcaaaaaacaaaacgccaacattaaaaataaaaaaataataacaaaaaaaaaaaaaaacatctaaatgaTAAACACTGTGCCTTTAAAAAGTACAAGTTTGGTAATTATTCCAGTAATTCAAAGGATTGTGCATTTAACAAATTTGTTTCTGTGAAGCTTTTGTATTATAGCAACAGCGGAGCACAAAAAGCAATCCTGCCATGGATTTGTGTGGTTCAAGGtgaatcatttaattttttatacaattatataatatgttGAACCTGCAACAACTTCAGATctgcaattaatacaaattgtaaacCTATGACTACAGAGTACCTCTTTTAACGGCAATGAAAGGAACTCGTCAATTGCAAGAACAGGCTtaaatttgcctttttttttttaccttagcACAGGAATTTGATTGTAACATTTGGCCAGATATTGTGAGATGAGTAACACATCGTGCACACACTTCAGCTCAGAACACATTATAAGCATTTCCAGTTAAGTTTTTCTTCAATGAGACATTAACAACCGTTTTATGGCACAAAAGAAATAGTAAACAACATTagatcattacattttatgttgaTTTTTCACATTACAAAGGTCTTGGTTGAATATCCAACAGAAATCAATGTACAGGATGCTTTGTGTAATGCTGTGGGGGGGCATTTGAAAGCTATTTTTACCTttctaacaaatactgaatcaaaaatatggtaaaaattatattaaaaaaaaaaaaaaatcaaatcaaactagTCATTCTCACCAGAACGTAGataaatactgtaaacaaagacctttcaattttaaatactgaGAAAGCTTAAAACCTTGAAATGACAGGACTGTTGGCTAGGCTCCGCACTGTATTGAATAACAGATGGTTCCCAAATGTTGGCATGTTTATTTATGCACTGCTTTcagtttggtttgtttgaatTGCTAGTATTAAAGTAAAAGGACACCCAGTGAAGTGTCCAGAAGACTCCATAACTATCAAACCCATCCAGGTCTGAACGTCCTTTCACCGGTCTTTAGGATTACTGAAAGACAACAGACACAGACCAAAGAAATAGGGGCTCAATGAGAGCTCTTTAGGTTTCAGGTTGGCAGAAAACATAGTAGAAAAGCCACTGGTATTAAAGGCAGGTTTGTTTTAAGCTGCTAAAAGGGAATTCAACAACAGGGAACAAGAACTTATCTGCCAAAGTGGAACAATTGCAGAAATCCTCCCAACTGATTTATCATCAGTGATTTTCTGCCAATCCACAAATGTTTAGTGCACTGCTGGTTCCCATTAGCAACACATAAGCAAGTAGGTTAATGGAATAATACCAttaaatgtgcatcagaaacagtTTGGCCTTTCCAAGCCTGGCACTTAAATCACCTACATTGAACTATGGCCTGCAAGTAAACAGATGTACAGATCACTTAGGTCATTCATAATTCAATCAGGCACCAGGTCAAAGCTTTGCAAAAGCAAGAACAATGAACAAGCCAAGACTTACACAGGCCCTAGGCTTACCACAGGCCTGGTCTAATTGAGGTTTCTGGAAAGGATACTTTGTCTAAAGCCAGTCACTATTCCACTCAGAGTGGGGTACATGACAAGTCCTGAAGGCTAGCAAGTTTAGCAATCCATGGCAGGTCTGCAACCTTTTCAATTATGAAAccccacatgcacacatttgaaatattagaggtaaacaaaaaacaaaaaatttaaacaaaagaaaagccaCAGTAGTTGCTAAAGTGCTTCTAATACTCCCACATTGTGGAGCTCTCAATGCTGTCAGCATTGGCTTTGAGCACGCCAGCATGGTCCCCCTTCAGGTACTTGCCACCCGAGGACTTGATTGCCACCTTGTTGTAGTCACAGAACTCCAGGAAGAAGTCCACCGGGGTGTCACTGCTGCTCACCACAGAAGATTCGTTGCCAACCATCCAGTACTTACCAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146499 lncRNA downstream 28473 13620223 ~ 13620432 (-) True G116949
TU146468 lncRNA downstream 114069 13528696 ~ 13534836 (-) True G116931
TU146454 lncRNA downstream 146408 13500718 ~ 13502497 (-) True G116918
TU146413 lncRNA downstream 281850 13366574 ~ 13367055 (-) True G116883
TU146402 lncRNA downstream 306157 13330891 ~ 13342748 (-) True G116875
TU146570 lncRNA upstream 198195 13886309 ~ 13887367 (-) True G117011
TU146572 lncRNA upstream 199307 13887421 ~ 13890103 (-) True G117012
TU146575 lncRNA upstream 209386 13897500 ~ 13966269 (-) True G117015
TU146648 lncRNA upstream 407177 14095291 ~ 14100107 (-) True G117066
TU146724 lncRNA upstream 544682 14232796 ~ 14233624 (-) True G117122
AMCG00018525 mRNA downstream 61835 13583104 ~ 13587070 (-) True AMCG00018525
AMCG00018524 mRNA downstream 70595 13572366 ~ 13578310 (-) True AMCG00018524
AMCG00018522 mRNA downstream 391655 13253124 ~ 13257250 (-) True AMCG00018522
AMCG00018521 mRNA downstream 403174 13238810 ~ 13245731 (-) True AMCG00018521
AMCG00018518 mRNA downstream 414221 13227151 ~ 13234684 (-) True AMCG00018518
AMCG00018529 mRNA upstream 55875 13743989 ~ 13745104 (-) True AMCG00018529
AMCG00018531 mRNA upstream 95739 13783853 ~ 13832385 (-) True AMCG00018531
AMCG00018532 mRNA upstream 163297 13851411 ~ 13857590 (-) True AMCG00018532
AMCG00018535 mRNA upstream 215505 13903619 ~ 13915955 (-) True AMCG00018535
AMCG00018546 mRNA upstream 332941 14021055 ~ 14036632 (-) True AMCG00018546
TU146385 other downstream 393136 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 1737569 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 2446017 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 2580587 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 3076903 10565795 ~ 10572002 (-) False AMCG00018431
TU146918 other upstream 815289 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 1048024 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 1810548 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 1810548 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 3320784 17008898 ~ 17009301 (-) True G117784

Expression Profile