RNA id: AMCG00018530


Basic Information

Item Value
RNA id AMCG00018530
length 4980
RNA type mRNA
GC content 0.52
exon number 36
gene id AMCG00018530
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13859895 ~ 13878065 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGGCGCGTATAAAGGAGAGTGTGGGGATGATGTGGATCCCATGCCTTTCCTGGCTCCTTCTGAGAAGGAGAAGCTGGAAATCATGAACAAGCCTTACGACATCAAAAAATCTTGCTGGGTGAAGGACGATAAGGAAGCCTTCATTGCTGCTGAGATCCAGTCTGAAAAGGGCGAGCAAGTTACTGTGAAGACAGTCAAGAACACAACCCTCACCCTTAAAAAGGATGATGTGCAACAAATGAATCCTCCCAAGTTCTACCAGGCTAGCGACATGGCCAACCTGACCTTCCTGAATGAAGCCAGTGTGTTGGAGAATCTCAGATCGCGTTACATCAATATGAGAATCTATACCTACTCTGGCTTGTTTTGTGTGACCATCAACCCTTACAGATGGCTGCCTATCTATGGGTCTAAAGTTGCCCAAATGTTCAAGGGAAAGAAGCGCAATGAGGTGCCACCCCATCTCTTCTCCATCTCTGACAATGCCTATCATGACATGCTGATGGAACATGAAAACCAGTCTATGCTGATCACTGGAGAATCTGGTGCCGGAAAAACTGAGAACACCAAGAAGGTCATCCAGTATTTTGCCAACGTTGGTGCAGTTGGAGGCAAACAGGTTTCAGATTCCAAGGGTTCACTGGAAGACCAGATCATTCAGGCAAACCCTGTGTTGGAAGCTTTTGACCTGCTGGAGAAATCTCGAGTAATTTCCCAACAAGCCGCGGAACGTGGCTATCACATCTTCTACCAGCTCCTGTCAGGGAAGAAGCCAGAACTgcttgAGGAGCTGCTGTTGGCTCCTGATCCCAGTCAGTATACATGGGTCTGCCAGGGAGTGACTGTGGTGGACAATATGGATGACGGTGAAGAGTTGATGCTCACTGATGTTGCCTTTGATGTCCTGGGCTTCACTGCAGAAGAGAAAATGGGTATCTACAAGTTAACTGGTGGAATCATGCACTTTGGCAACATGAAGTTCAAGCAGAAACCAAGAGAGGAGCAGGCTGAAGTGGACACCACTGAGGTGGCTGACAAAGTTGCGCATCTCATGGGGATCAACTCAGGGGAACTCCAGAAGGGCATTACCAGGCCTCGTGTGAAGGTGGGGAATGAGTTTGTGACAAAGGGCCAGAATCAAGACCAGTGTGTCTACTCCATCGGTGCCCTGGCCAAAGCCGTCTATGACAGGATGTTCAAGTGGATGGTCGTCAGAATCAACAAGACCTTGGACACAAAGATGCAGCGCCAGTATTTTATTGGTGTGCTGGACATTGCTGGGTTCGAGATCTTTGAGGAGCAGCTGAACAAACTGATGACTACTCTGCGTAGTACCGCCCCTCACTTCGTCCGTTGCATTGTGCCTAATGAATATTATATCCTGAACCCCAATGTCATCCCCAAGGGATTTGTAGACAACAAGAAAGCTTCAGAACTGATCCTTGGCACAACTGGCTTGGATGACATGGAGTACAGGATTGGGCACACAAAGGTGTTCTTCCGTGCTGGAGTCTTGGCCAAGCTGGAGGACATGCGAGATGAGCGTTTGGCAAAGATCATGACCATGCTTCAGGCTCGCTTGCGTGGCTTCTTAATGCGAATTGAGTTCAAGAAAATGCTTGACAGAAGAATTGCTCTGATTGCCATCCAACGTAATGTACGCAAATTCCTACAGCTCCGCTTCTGGGGATGGTGGAAGCTTTACAACAAGGTCAAGCCTCTGCTGAATGTGGCTCGGCAGGAGGATGAGATGAAAGCCAAGGAGGAGGAGCTGCGCAATGCCATGGAGAAGACCCAGGAAATGGTCAACAGAATCAAGGAGCTTGAAGAAAAGTTGGCCACTGTTTCTCAGGAGAAGAATGACCTTGCATTCAGTCTGGCAGCTGAACAAGAATCGTTGGCAGACGCAGAGGAACGCTACACTCAGCTGATGAAAACAAAGATCAGCTTTGAGAGCCAGCTTCAGGAGATGAAGGAGcggctggaggaggaggagaacgCTGCCAGCAGCCTTGGATCCCACAAGCGCAAACTGGAGGGGGAGCTCAGTGACCTCAAGAGAGACCTTGAGGGCCTGGAGTCCACCCTTGCCAAAactgagaaagagaaacagGCTCTAGACCACAAAGTGCGTTCCCTTACTGGAGACCTGGGCCAGAGAGATGATACCATTGCCAAACTCCAGAAGGAGAAAAGAGCACTTGAGGAGCTGCATCAGaaaacACTGGATGATCTTCAAGCAGAGGAGGACAAGGTGAACCACCTCACCAAGAGTAACAGCAAACTCAACACCCAGATCCATGAGCTGGAAGACAACTGGGAACAAGAGAAGAAGATCCGTGCAGAGGTTGAGAAAGCTCGGCGCAAGGCAGAGGGGGATCTGAAAATGACCATTGAAAATCTGAATGAGATGGAAAGAGCTAAGCTTGATCTTGAAGAAATTGTCAAAAAGAGGGATCTGGAGGTCAACCATGTGAACTCAAAATGGGAAGATGAACAGTCACTGAACTCTACCTTGCAGAGGAAGCTCAAAGAGCACCAGGCTCGCATTGAAGAGTTGGAGGAGGAACTGGAAGCAGAGCGGGCTATGAGGGCTAAGGTGGAGAAGCAGCGTGCTGACCTGTCTCGTGACCTGGAGGACCTCAGTGACAGATTGGAGGAGGCAGGCGGGGCTACAGTTGCTCAGATTGAGCAGAACAGGAAGCGGGAGGCTGAGCTGCTGAAACTGCGTCGGGAGCTGGAGGAAGCAGCTCTGCAGTCTGAAGCCACCGCGTCGGCTCTGCGCAAGAAGCATTCAGACTCCATGGCAGAGATTTCTGAGCACGTGGAAAACCTGCAGAGGGTGAAGGCAAAGCTGGAGAAGGACAAGCAGGTCATGAAGGCTGAGATCGATGACCTCAGTGCCAGCATGGAGTCTGTCCAGAAGTCCAAGCTAAATGCTGAAGCCCATGTTCGCAAACTGGAGGACAATCTGGCTGAAGCCAATGCCAGAGTGGCGGAGATGGAGAGGAACCAAACAGAACTGAATTCCTTCAAGACCAGGTTATCTGCTGAGAACAGCGACCTGAGCCGGGAACTGGAGGAGTCACAGAGCAAACTGACCCAGATTGTGCGCATCAAGACCACACTGACCTCCCAGACTGATGATCTGAAGCGGCAAGTGGATGAGGAGTCCAAGGCTCGCAGTGCAGCAGTGGTGAGCCTGGCCAATGCTCGCCATGACCTGGATCTGATGAAGGAGCAGCTGGAAGAGGAGCAGGAGAGCAAGGCTGAGATGCAGCGGCTCATCTCCAAGCTCAACTCTGAGGTCACCACCTGGAGGACCAAATATGAAACTGACGCCATCCAGAAGACAGAAGAGCTGGAAGAGACCAAACGGAAGCTGGCAGCCCGGCTCCAGGAAGCAGAGGAAGCTGCAGAAGCAGCACAGGCCCGGGCAGCAAGCCTGGAGAAGGCCAAGCAGAGGCTGCAGGGAGAGGTGGAGGATCTCACCATCGACCTGGAGAAGTCGaatgctgcagctgctgctctgGACAAAAAGCAGCGCACCTTCGACAAAATGATCGCAGAGTGGAGTCAGAAGTGTGAGGAGCTTCAGGTGGAGCTGGACAACTCCCAGAAGGAGTGTCGCAGCTACATGACTGAGGTCTTCAAGCTTAAGACGGCCTATGAAGAGGCACTGGAACACTTAGAGACTGTGAAGAAGGAGAACAAAACTCTGCATGAGGAGATCAAAGATCTTGTTGATCAGCTGGGAGAGGGTGGAAAGAGTTTCCATGAGCTGCAGAAGATCAAGAAGAAGCTGGAGATTGAGAAAGATGAGCTACAAGTGGCCCTGGAGGAAGCTGAGGCCTCCTTGGAGGTTGAGGAGAGTAAAGTTGTCCGAATCCAGCTGGAGCTGGCTCAAGCCAGCCTGGAAGCAGAGGCCAAGGGCCGTGCTGAGGCCCTGCGGCTGAAGAAGAAGATGGAGACAGACCTGAATGAAATGGAGATCCAGTTGGACCATGCCAACAAGAACAACAGTGAGCTGGTCAAAACTCTTAAGAAACTACAGCAACAGATCAAGGACATGCAGATGCAGATGGATGAGGATACACGTCAACACGAGGAGCTGAGAGAGCAGTACAACCTGCAGGAGCGCCGCCTCAGCCTTCTCCAGACTGAGCTGGAGGAAGTGCGCAGCGGGCTGGAGGCCTCCGAGCGTTCCCGCAAACTCATTGAACAGGAGCTGGTGGAGATCACAGAGAGACACAACGAGCTGAATGTGCAGAACCAAAGCCTGATCATCATCAAGCGCAAGATGGAGGGAGACCTTCAGCGCATCTCCAACGAGAACGAGGAGCTGATCAGCGAATTCCGTGCTGCTGATGAGAGAGCCAAGAAAGCAGTGACTGATGCCACACGCATGGCAGAAGAACTGCGACAGGAGCAGGATCATTGCATGCACCTGGAGAAGATCAAAAAGGCCAATGAGATCACTATCAAGGATCTGCAGGTCAAGATGGAGGAGGCCGAACAGCTTGCCCTGAAGGCTGGCAAGCGCACCATCCAGAAACTGGAGGCCAGGATGAAGGAGCTGGAGACTGAGCTGGATGCTGAGCAGAAGCGCCATGTTGAGACGGTTAAGGTCCTGCGCAAGAACGAGAGGCGCCTCAAGGAACTGGTCTTCCAGACGGATGAGGACCACAAGACCAACCAGCGCATGCAAGAACTGGTGGAGAAGCTGCAGAACAAACTGAAGTCATACAAGAGGCAGATTGAAGAGGCGGAAGAGCAAGCCAACCAGAGCCTGTCCAAGTACAGGAAAACTGTTCATGAGCTGGATGATGCCGAGGAGCGGGCTGGCATGGCCGAGTCAGCACTGAACAAGCTGCGCACCAGGAACCGCGCATCTGTGGGGAAGGGCTTCACATCCGTGGAGATCATCCAGGTGTCAAAGTCGTCCTCCTCCTCAAAGACCACCTCCGAGGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146533 lncRNA upstream 12803 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 19924 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 168528 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 492867 13366640 ~ 13367028 (+) True G116882
TU146286 lncRNA upstream 644543 13129738 ~ 13215352 (+) True G116790
TU146591 lncRNA downstream 142578 14020643 ~ 14022806 (+) False AMCG00018537
TU146732 lncRNA downstream 364052 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 364799 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 366643 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 452776 14330841 ~ 14399539 (+) True AMCG00018564
AMCG00018527 mRNA upstream 74346 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018526 mRNA upstream 210803 13639723 ~ 13649092 (+) True AMCG00018526
AMCG00018523 mRNA upstream 325068 13468893 ~ 13534827 (+) True AMCG00018523
AMCG00018520 mRNA upstream 513018 13321350 ~ 13346877 (+) True AMCG00018520
AMCG00018515 mRNA upstream 607650 13246534 ~ 13252245 (+) True AMCG00018515
AMCG00018534 mRNA downstream 7715 13885780 ~ 13902661 (+) True AMCG00018534
AMCG00018533 mRNA downstream 63563 13941628 ~ 13960988 (+) True AMCG00018533
AMCG00018536 mRNA downstream 94485 13972550 ~ 13985601 (+) True AMCG00018536
AMCG00018537 mRNA downstream 119844 13997909 ~ 14022066 (+) True AMCG00018537
AMCG00018547 mRNA downstream 233639 14111704 ~ 14111910 (+) True AMCG00018547
TU146394 other upstream 531623 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 604101 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 1340014 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1889117 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 4246977 9609077 ~ 9612918 (+) False AMCG00018380
TU146594 other downstream 141863 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 168194 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 263312 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 310938 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 361433 14239498 ~ 14242037 (+) False AMCG00018551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_07058610_07069169.mRNA False 2987 mRNA 0.53 14 CI01000047 7058610 ~ 7069930 (+)