RNA id: AMCG00018533


Basic Information

Item Value
RNA id AMCG00018533
length 2898
RNA type mRNA
GC content 0.37
exon number 7
gene id AMCG00018533
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13941628 ~ 13960988 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCCTTCTATTACTTCACCACTTGGAGAAAGGTGGTTTTCTTGCAGATTTGAGTGCTAAACTTACAGTAGCCTTGAGGACACACCCCTCCACACAGTattcATGAATAACAGAGTTCCGTCCAACAAGAGGTATCAGCCGACAGAGTATGAACACGCAGCGAACTGCGCCACGCATGCGCTCTGGATAATTCCAAGCATCCTTGGCAGCTCCATCCTCTACTTCCTGTCTGATGACCAATGGGAGACGATCTCAGCGTGGATTTATGGCTTTGGACTGTCGGGCCTCTTCATTGTATCCACTGTCTTCCACACCATCTCCTGGAAAAAGAGCCACCTCCGGACAGTTGAACACTGTTTTCACATGTTTGATAGGATGGTGATATACTTCTTCATTGCTGCCTCCTACGCCCCCTGGTTAAACCTGCGAGAGTTAGGACCATGGGCTTCTCACATGCGTTGGATCATTTGGATAATGGCCTGTGTGGGAACagcatatgtttttttctttcatgaaagGTATAAGATTGTGGAGTTAATATGCTATGTGATAATGGGTGTCTTTCCGGCCTTAGTGATCCTCTCAATGGCTAATAAAGATGGGCTGTTTGAACTGGTCCTGGGCGGTATGTTTTACGCgctaggtatggtgttcttcaAAAGTGACGGACGCATCCCCTTTGCCCACGCTATCTGGCATGTCTTTGTGGCGATTGGAGCTGGCATCCATTATTATGCCATCTGGAGGTATCTTTACAGACCTGGGagcacagaaatgaaaacatctaGATAACATACCGGGACCATGTGACAGGGAAATCCTGCCCActtaatatgaaatacaaaggTAGAGGGATCATTTTTTCCcattcatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaagctTTTATCTCAAAGAGCTTAGTGAGAAGAGTCttctttttcagattatttaGTTTCAGAGCACTTCTAAAAAGGCAACATGTTGTAGGTCTTGTAGAGTTGTGTGAAAAGGGCCAAggttatttttctgttaatCTCCACGTTAAGATCACTGCAGCTCCTTGGGATCTATTCATtattgcatttcacatttcacagtgtcaatttgaacattaacaaacaacatgttttggttttgttcaatGTCCGATTATTGTGCCAACATGGATTTCTAATTATTATAAGTTTCTTTTCACATCCTTCATGTGGTCCTAATATAATTAAGCGACTAGCCTACTGccaaattcattatttaaatttgcGATAATTAACAAATGCAATATGATAGATAACTCATTTGAAAAATGCCACATGTCAATtgctacaaacaaacaaaacaaaaagcaatacatgtacatatactGTACCCTAAATGTATGCTTAAATATTAGCCGTCTTCTAAAAATCAAAAGCAGTGTTTATTTAGTTACATTGTATTCTCAAACACGGTACATTGCTGTTTTCCATGAGGCAGTTGATCCACCAAAAAATACCAGCTTTACACTTTAACAAAATAGAACAAATAACAGAATTcatgccattttaaattaaatcagtgatAAAAAGGCATCACAATTCTTAGTGTCTGTATAACTTAAAAACAAGGACAAACTTGGTATGCATTAGtcatttttaatctaaaaaaaataaaaattactaATAGAGCCCTTTGTTTAGATGGAATTAGTGACTTCATGATTTGGTATAGCATTAAGACTGTTAAAATTGAAGAGCAatcatatttttacaataatattcATCCTTAACTTTAAAGGTGAAGGCTCTGTCTTCACAATGGCAAAAACGTTTATTATTagccagtgaaaacaaaaaggtttcGTAGACTGCGTGAGCAAGGTGACAGAACACTTTTaactttttccctttttacattttttaattttccctgTTACCCAACACATTTTAGGTGCCTTTCTAACTTTCTAAATGGACTTCATAATTCATTGATAGTCCTGTAAACTACATCCAGTGTGTCCTAGCTCTCGGTAAATCAATGGCAAGATTACTCAGTGACAAACTAACATATATTCTGTAGATTCACTATTAAGGTGTTTTGGTTCATCTTGCAGGCAAGGCTAAATTTATAGCAAAACTCACTGCTGCAAGTGTCTGTAATACTTCCTCTGTGAGCTGCCTGATGACTCAGACAGGGAAGTATTTTCTGTGTGGCACcacttgtgtttttatgagatgtatttttcatatggATGTCATGCTCACTTAGATTTTGGTCTTTCTGTGTGCTTATGAGCAGCAAACTAGCAGCTTGAATGTTGAAGAATCCCACCACTAGAAGCCTTACCAAACCTCAACACTAAGAATGAAAGGGTGCTTGGTAGGACATCAAACGTACCGTGTGTTCCTTCACAAGAGTATTATACAGGTTCTTAATTTTCCAGTTGGAAATAGTAGAACAACGccaaaaaacaagaatattgaaaaaggaaatgcagaGTACAGCTACATTATTGGGACCATATTTAACATTACttttcaacacatttatttgtctttagtTGCTACAGTGGCAGTGTTTGGCAACCAAAATAGGATTTTAGTAGATTTGATTTCTACTGTAATTATGCTTTTGCTTAAAgttctaatttaattaacatatttgacAATACTGTTAGTACCGTTTCCAGAATTATGTAAAGGTACTGTGTTTCGAATGAACAGAGAGATTATAGAATCTGTATCTGAAATCAATATATGAAGTGTTATAATTGTAGCTTTCTTGAAATGGGAGAACACATTACAGTAGATGATTGTATCTTATTCCTTGAATCACAAATTAAGTTTACATCAAaggtactgtttttttttttatttttttactattttccttttaaaacaagCGAAAACCTGCA

Function

GO: NA

KEGG:

id description
K11064 MMD; monocyte to macrophage differentiation protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146533 lncRNA upstream 94536 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 101657 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 250261 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 574600 13366640 ~ 13367028 (+) True G116882
TU146286 lncRNA upstream 726276 13129738 ~ 13215352 (+) True G116790
TU146591 lncRNA downstream 59655 14020643 ~ 14022806 (+) False AMCG00018537
TU146732 lncRNA downstream 281129 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 281876 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 283720 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 369853 14330841 ~ 14399539 (+) True AMCG00018564
AMCG00018534 mRNA upstream 38967 13885780 ~ 13902661 (+) True AMCG00018534
AMCG00018530 mRNA upstream 63563 13859895 ~ 13878065 (+) True AMCG00018530
AMCG00018527 mRNA upstream 156079 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018526 mRNA upstream 292536 13639723 ~ 13649092 (+) True AMCG00018526
AMCG00018523 mRNA upstream 406801 13468893 ~ 13534827 (+) True AMCG00018523
AMCG00018536 mRNA downstream 11562 13972550 ~ 13985601 (+) True AMCG00018536
AMCG00018537 mRNA downstream 36921 13997909 ~ 14022066 (+) True AMCG00018537
AMCG00018547 mRNA downstream 150716 14111704 ~ 14111910 (+) True AMCG00018547
AMCG00018538 mRNA downstream 182180 14143168 ~ 14145995 (+) True AMCG00018538
AMCG00018539 mRNA downstream 198675 14159663 ~ 14161738 (+) True AMCG00018539
TU146394 other upstream 613356 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 685834 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 1421747 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1970850 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 4328710 9609077 ~ 9612918 (+) False AMCG00018380
TU146594 other downstream 58940 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 85271 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 180389 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 228015 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 278510 14239498 ~ 14242037 (+) False AMCG00018551

Expression Profile