RNA id: AMCG00018536


Basic Information

Item Value
RNA id AMCG00018536
length 1708
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00018536
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13972550 ~ 13985601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTAGATTGCAGTCTAGCCAGAGCCCCAGCGGGATGTTTTATGGGTCCTCAGCTAGTATGTCCCTGCCATCCAAGAACAAGCTGAAGAGGCAGAGCCGCACATTCACACAGGTCCTGTATCGCACCTTGAGTTACCGTGACAGGCGCTCTGTCACCGACCTCCCTGAGCAGCTCACCGATGACCCATCAGAGCTGTCCACCCAGACCTCGGCCCCCGGGGTCCTGAAGATCTTCGGGGATGAAATCTGTGTTGGGGCCAACTACAAGAGTGTGTTGGCCACTCCACGCTCCAGTGCTCAGGAGCTCGTTAAGGAGGCACTGGAGCGTTACTCCCTCAACAAGATGTCTGTGGGAGAGTACGTGATGTGCGACGTTATCGGGAAGTTTGAGGGGCCAGAGAAGCAGTGGCGGACTGAGTGTCTCAGGGCTCTGGGGGATAATGAGAAGCCCCTCCTGCTGCAGGACCTGTGGAAGCCAAAGGAAGGCTATGCACGTCGATTCGAACTACGCAGCCGGGCAGAGGTAGAGGAGATTGCAGCCCGGGAGAAAGACACTCGTTTGGCACTGCGCTCCGCTGCTCCAAACTTTAAAGatatAAATGCCCAAGCCAGAAAGCTGCAGAGGAACCGGGCAAAAGGGACTATGACACTGAACCCGGGTGCAACGTTCTGCCGCAGCTTGAGTGAGACCAGCCTCAATCTAGTTGGTGGGCCTGGAGATGAGCCCAAGAGATACTACTCTACACTCCCTGGGCCGCTGAGAGGGAGAAGCAGCAGGGAAGGTCCCCAGAcagggaggaggaaggaggagagagaaaatggagGAGACTGCCTGGTGTACCTTCTGACCCGAGACCAGCACACGGTGGGTCAGGAGACGGCCTCAGCACGGCCAAACATCTGCCTCTCCTCCCCAGATATCCTTCCCCTCCACTGCAAGATAAAGAAGATCCAGGTTATGCGGCGTTTCAGCCACACCGTGGAGGAAAGGCTGGTGGTGGAGCCTGTGCCGCACGGTAGTGTCTTAATCAATTTCTCCAAGGCGGAGCGCACCACCCAGCTACGTCATGGCGACCTTCTCTCCTTTGGGGTACACTACATCTTCCTGTACAAGGACCCCCTTAACGCCAAGCTGCTGCCTGCCCAGACATTAGCCAGACTTAAGAGCCTCAACAACCTGTATGAGTCTGAGGGTGACAGTGGCTTGGGGCAGGCCTGCCGAATGTGTGGCACTCTGATCAAAGACAAATCCTTACCACGCCGCAGCTACAAACCCCACCTAATCAAAAACAGGAGTCTGCAGAGGAGGAAGCTACACCTGGACTTCGATAAAGTCCACGAGGACGAGTTGCTTGGGAGAATAATGTCCCTCATCGAGCCAGGTGGGGATGACCACAAACTGACCCCGGCCTACCTCCTTTGCCTGTGCATCAAGCACTCGGCCACAGCTTTTGAGCCAGGGAGCTTTGGGAAGCTTCTTCTAAAGATTGTGAAAAGGATACAGTCTATAGCTTGGGAGAAGACAAAGGACTTAGCAGAGAAGCAAGCTCAGCATCAGGACCCAGCCTCCCTGTCTCTGCTCAGTATCTCAGATATGGTCCCTGATCTTCAGATAATCTTCTTCTGGATGTCTAATGCCATTGAGATCCTCTATTTCATACAGCAGAAATCTCCCATCTACATGCAAGGCATAGAACAGATTGACACC

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146533 lncRNA upstream 125458 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 132579 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 281183 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 605522 13366640 ~ 13367028 (+) True G116882
TU146286 lncRNA upstream 757198 13129738 ~ 13215352 (+) True G116790
TU146591 lncRNA downstream 35042 14020643 ~ 14022806 (+) False AMCG00018537
TU146732 lncRNA downstream 256516 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 257263 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 259107 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 345240 14330841 ~ 14399539 (+) True AMCG00018564
AMCG00018533 mRNA upstream 11562 13941628 ~ 13960988 (+) True AMCG00018533
AMCG00018534 mRNA upstream 69889 13885780 ~ 13902661 (+) True AMCG00018534
AMCG00018530 mRNA upstream 94485 13859895 ~ 13878065 (+) True AMCG00018530
AMCG00018527 mRNA upstream 187001 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018526 mRNA upstream 323458 13639723 ~ 13649092 (+) True AMCG00018526
AMCG00018537 mRNA downstream 12308 13997909 ~ 14022066 (+) True AMCG00018537
AMCG00018547 mRNA downstream 126103 14111704 ~ 14111910 (+) True AMCG00018547
AMCG00018538 mRNA downstream 157567 14143168 ~ 14145995 (+) True AMCG00018538
AMCG00018539 mRNA downstream 174062 14159663 ~ 14161738 (+) True AMCG00018539
AMCG00018553 mRNA downstream 204341 14189942 ~ 14191067 (+) False AMCG00018553
TU146394 other upstream 644278 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 716756 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 1452669 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 2001772 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 4359632 9609077 ~ 9612918 (+) False AMCG00018380
TU146594 other downstream 34327 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 60658 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 155776 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 203402 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 253897 14239498 ~ 14242037 (+) False AMCG00018551

Expression Profile