RNA id: AMCG00018537


Basic Information

Item Value
RNA id AMCG00018537
length 1647
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00018537
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13997909 ~ 14022806 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTAAGGAATCTCTGCTATCGACTACAATTTCAGCCAATGAGGAAGCAATGACAATCCTGGAAGAAGTCATAATGTACACTTTCCAGCAATGTGTCTATTATATAACAAAGtctttgtatgtttgtttgccCAGCCTGCTGGACTGCAGTTCTTTCCAGGGAGAGAACAGTGACCTCTGCTGGCGAAACTCAGCAGTGCTCCCTGAACCCATGCGCAAAGTGCTCCAGATCTTCCAGACCACCCAGGACCTGCTCCAGCAGTACGAGGTTCACCCGGAGATCCAGTCCCAGATGTTTGCAtatctcttcttcttctctaaTGTCTCCCTCCTCAACCAGCTCTTAGACAAAGGCCCGAGTCGCAGCTGGTTCCAGTGGTCTCGTGGAGTTCAGATTCAGGCCAGACTGGGGATGCTGCTGGACTGGGCAGGGAAGGCTGGACTCGGCCACCTGGCTGAAAAATTCTTCACCAAATTTTCCAGCACTGTGGGGCTCCTGGCCACACCAACACAGCAGCTTGTACAGATGAGTTGGAAGGTTTTGTGTGCCGAATACCCTGCTCTTAAACCTGTGCAACTGCACCGCATTCTGTCTGAGTACCAGCTGGGCCCGGAGACTGGTCCAGTGCCCGCCTGGCAGCCCAGCCCTGAGGAGGAAGTGATCTACAGGACAGTCGACCTTCTGGAGAGTTTTGAAAACCACCCTCCCATCGTCCTGCCCAGCAGTGGCTTTAAGGTGGACCTAGAGTGTGACGCTGTGGATGACAACATCTACAGACAGCTGCTCTACATCCGCCACTATCTGTGGAGCTTGAGGaccaagtccccgtccacgaaTGGCAGTGCAGATTTACAGGAGCTCCAAGTGAAGAAGGACCTGCCAGTGAGTCACAGCAGCCCGCGACCCGCAGCCCCAGACCACAGCTCGTCCCTTGAGCCGAACCAGCCTGTCGCTCCCCTTGAGTCTGAAGTGGACGGGAGGGTCTCTGTTATGTCCAATATCAGCATAGGCTCCAGGGAAATCCACTGCCAGGAGGACAAACTGAAGGAGAAGCTGCAGCAGATTCAAATGCAGAATAGCCTGCGGAGGAACGGCTCCTTCCGGCAGAGCATGCAGCCTCTGGACCCCTCCTGCCTGCTGACACCCCCCAACACCCCCCTGTACCCTGAGCTCAGCCACTCGGACAAGCTGCagaagaacagcagcagcaggccccCCCTTGACCTGAAAAAGGGACTCAATGGCTTCATTGCCAAAGGAATGGAAGGCCACATGAGTGGGGTCTTTGACTTGCCCACCCCAGTCTCCTCCAGTCACAGCTCAGCATCTGATGATTTCTGTTACGTGTTTGTAGTGGAACTGGACAAGGGACCCTATGGACTGGGCATGGGACTGATCGACGGGCTGCACACTCCCTTAGACTCTCCTGGGATCTACATCCGAACCCTAATACCTGATGGACCAGCAGCATCGGATGGCCGTCTCAGTATTGGTGACAGGATCCTGGCTGTGAATGGGACCAGTCTCATAGGAGCAGACTATCAGAGTGCTGTGGACCTCATACGAATGGGAGGCGGGAGACTGCGGTTCCTCGTTGCCAAGTCTGACCTGGAAGTCTCTGAGAAAATCAGTGCGTCTTCATGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146533 lncRNA upstream 150817 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 157938 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 306542 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 630881 13366640 ~ 13367028 (+) True G116882
TU146286 lncRNA upstream 782557 13129738 ~ 13215352 (+) True G116790
TU146732 lncRNA downstream 220051 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 220798 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 222642 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 308775 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 387065 14409131 ~ 14412255 (+) False AMCG00018567
AMCG00018536 mRNA upstream 12308 13972550 ~ 13985601 (+) True AMCG00018536
AMCG00018533 mRNA upstream 36921 13941628 ~ 13960988 (+) True AMCG00018533
AMCG00018534 mRNA upstream 95248 13885780 ~ 13902661 (+) True AMCG00018534
AMCG00018530 mRNA upstream 119844 13859895 ~ 13878065 (+) True AMCG00018530
AMCG00018527 mRNA upstream 212360 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018547 mRNA downstream 89638 14111704 ~ 14111910 (+) True AMCG00018547
AMCG00018538 mRNA downstream 121102 14143168 ~ 14145995 (+) True AMCG00018538
AMCG00018539 mRNA downstream 137597 14159663 ~ 14161738 (+) True AMCG00018539
AMCG00018553 mRNA downstream 167876 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018549 mRNA downstream 170072 14192138 ~ 14200344 (+) True AMCG00018549
TU146394 other upstream 669637 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 742115 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 1478028 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 2027131 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 4384991 9609077 ~ 9612918 (+) False AMCG00018380
TU146602 other downstream 24193 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 119311 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 166937 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 217432 14239498 ~ 14242037 (+) False AMCG00018551
TU146792 other downstream 323024 14345090 ~ 14347741 (+) True G117178

Expression Profile