RNA id: TU146633



Basic Information


Item Value
RNA id TU146633
length 735
RNA type TUCP
GC content 0.48
exon number 4
gene id AMCG00018538
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14141377 ~ 14145995 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GATATTTCACAGTCAAGAGCAGCAGGTCCCACTCAACCTCGTTTAAAGATTTTTCCAAAAAACATCCATGCCAATAGGGAGCTTACTTGGGTGGGACCCTGCAGCAGAAGTACTCGGCGTTGCTCAGCCACCGCCGGACACCGCAATTATAGAGTGGAGGCGACGGATCAGACAACGGGAAGAGTAGCAGCAACACCGAGGCACCATGTCTGACAGGAAAGCCGTCATCAAAAACGCAGACATGTCTGAGGATATGCAGCAGGACGCTGTGGAGTGTGCCACCCAGGCTCTTGAGAAGTACAACATTGAGAAGGACATAGCAGCATACATCAAGAAGgagtttgacaaaaaatacaacCCTACCTGGCACTGCATTGTGGGCAGGAACTTTGGCAGCTATGTCACCCATGAGACCAAGCACTTCATCTACTTCTACCTGGGGCAGGTGGCCATTCTTCTGTTCAAGTCAGGATAAAGACACTAACCCAGTGGCCCGCAGTACAGTCCAAAACATCCCTGTTCCAGGCACCAGCAGACGGACTGCTCTGCGGAGCTCCAGCTCTGTGACGGCTCATTGGCATTCACAGTGCAGGGACCTCCACATTTCTGTGCTGCttcacttttttcccttactggTAGAAATGTCCATGCATCAAAtactagtatttatttttattcattttctataCAGCAAAGAAACCGTGCTCCTCAAATAAAAGTCTTTTTTAGAAAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146591 lncRNA upstream 118571 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 294285 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 301406 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 450010 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 774349 13366640 ~ 13367028 (+) True G116882
TU146732 lncRNA downstream 96539 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 97286 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 99130 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 185263 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 263553 14409131 ~ 14412255 (+) False AMCG00018567
AMCG00018547 mRNA upstream 29467 14111704 ~ 14111910 (+) True AMCG00018547
AMCG00018537 mRNA upstream 119311 13997909 ~ 14022066 (+) True AMCG00018537
AMCG00018536 mRNA upstream 155776 13972550 ~ 13985601 (+) True AMCG00018536
AMCG00018533 mRNA upstream 180389 13941628 ~ 13960988 (+) True AMCG00018533
AMCG00018534 mRNA upstream 238716 13885780 ~ 13902661 (+) True AMCG00018534
AMCG00018539 mRNA downstream 14085 14159663 ~ 14161738 (+) True AMCG00018539
AMCG00018553 mRNA downstream 44364 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018549 mRNA downstream 46560 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018552 mRNA downstream 85412 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018550 mRNA downstream 87144 14232722 ~ 14237949 (+) True AMCG00018550
TU146602 other upstream 92224 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 118571 14019928 ~ 14022806 (+) False AMCG00018537
TU146394 other upstream 813105 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 885583 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 1621496 12515803 ~ 12519881 (+) True AMCG00018491
TU146688 other downstream 43425 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 93920 14239498 ~ 14242037 (+) False AMCG00018551
TU146792 other downstream 199512 14345090 ~ 14347741 (+) True G117178
TU147075 other downstream 630211 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 641045 14786623 ~ 14788133 (+) True G117383

Expression Profile