RNA id: AMCG00018539


Basic Information

Item Value
RNA id AMCG00018539
length 792
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00018539
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14159663 ~ 14161738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGGCAGCGTGGGGGAGTGGCAGCAGGTGCGGCGCAAGAAGGGGGCCAGGCGGTCGAGGGGTCCAGATCGCCATGGCCGCAGCGAGGCGGATGACACGGTGGACGTGGACAGCCTGCGGGACAGAGTCACAGCAGCCATAGGCTCAGTACTGTCTCTCAGTCCACTCCACTCTTCCTCCTCAGAGCTGCTGGCAGGCTGCCTGGCTGAAGACAGTGAGAGGGTTCACCCTCCCCAGGACAGAGCCATGCCCACCCCCGAGCTTGACTGTATCCCCCCCTGGCGTTGCTGTGTGTTTGACCCTGTGTTCAGTCCAGCAGAGGGCGCCGTGCTACAGGGCCTGGGGCTCACTGTGCTCACCGAGAACGAGGAGGGGAAGCGGCTGGCCGCCCGGCCCACACTGTTCTATCTTATCCACTGTGGCAAGGCGCTATACAACAACCTGCTGTGGAGGAACTGGAGCACAGAGACACTGCCCCATCTGTCCATCCTGGGGAACAGCTTCCGTGGCATCCAGGAGAGGATGCTGGACCGAGTTCTCAGAAGGGATTACAGCTACATTGCTGCCGCAGTGGGGGCGTGCGAGGAGACTGTGCTGAGCCCACCCTCCACCCGCTTCCTCGATGTCTTCAATGACACAGCCCTGCTGCgcttcccccccacccacctcgCCACCCTGCCTCCCCACATCTGGGCCAACCCCCCCGAGCCAAAGTACCAGCACTGTGAGGATCTGGAGATCATACAGGTGGAGAGCGGGGGGGACACTGGTGTAAAGAGGATGGGGTAG

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146591 lncRNA upstream 136857 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 312571 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 319692 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 468296 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 792635 13366640 ~ 13367028 (+) True G116882
TU146732 lncRNA downstream 80379 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 81126 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 82970 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 169103 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 247393 14409131 ~ 14412255 (+) False AMCG00018567
AMCG00018538 mRNA upstream 13668 14143168 ~ 14145995 (+) True AMCG00018538
AMCG00018547 mRNA upstream 47753 14111704 ~ 14111910 (+) True AMCG00018547
AMCG00018537 mRNA upstream 137597 13997909 ~ 14022066 (+) True AMCG00018537
AMCG00018536 mRNA upstream 174062 13972550 ~ 13985601 (+) True AMCG00018536
AMCG00018533 mRNA upstream 198675 13941628 ~ 13960988 (+) True AMCG00018533
AMCG00018553 mRNA downstream 28204 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018549 mRNA downstream 30400 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018552 mRNA downstream 69252 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018550 mRNA downstream 70984 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018551 mRNA downstream 77504 14239242 ~ 14242265 (+) True AMCG00018551
TU146633 other upstream 14085 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 110510 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 136857 14019928 ~ 14022806 (+) False AMCG00018537
TU146394 other upstream 831391 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 903869 13253343 ~ 13255794 (+) True G116832
TU146688 other downstream 27265 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 77760 14239498 ~ 14242037 (+) False AMCG00018551
TU146792 other downstream 183352 14345090 ~ 14347741 (+) True G117178
TU147075 other downstream 614051 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 624885 14786623 ~ 14788133 (+) True G117383

Expression Profile