RNA id: AMCG00018540


Basic Information

Item Value
RNA id AMCG00018540
length 3644
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00018540
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14143176 ~ 14152386 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAGGTCACGATAACATGGCGGCCTCCACAGCATGCTTCACCTACAGAACTGTTGGTGTTGTTCCTCGTCTTTTCGCCGCCCGATCAAGGTGTCAGATCCCGTCTGTGCCTCTGAGCGGGTCGTCCCGAACCGACCTGTGGAGACGGAACTGCAGCTCTGGTCGCGAAGACAGAACCGCACACTTCGGCTTCGAGACAGTATCGGAAGAGGAGAAGGCGAAGAAAGGGGACATCTCGTTCCGGTTCCTGGAGTTCGTGCGTTGGCAGGAGGCTGGCCGAGCACGGCGGGCGGCTCGCTCTCTGCAAACTGTCTCCTGGCAGCAGATTGCTGATGTGTACCGCAGCAGACCCACGGGGGACGGGGCACGGGCCGTTGTGTGCGACATCAACAAGGAGATGTTGAAAGTGGGGAAGCAGCGTGCGGACGACCTTGGGTATCACACAGgCCTGTCCTGGGTGGTGGGTGATGCGGAGGAGCTGCCATTTGAGGATGACAGTTTTGATGTTTACTCCATCGCCTTTGGGATCCGCAATGTCACACACATAGAGCAGGCTTTGCAGGAAGCACACCGGGTCCTGAAGCCAGGGGGTCGCTTCCTGTGTCTGGAGTTCAGTCGAATCTCCAACCCCATCCTGTCCAGGCTCTATGATGCCTACAGTTTCCAGCTGATCCCAGTTCTGGGTGAAGTCATCGCAGGGGACTGGAAGTCGTATCAGTATCTGGTGGAGAGCATCCGGCGCTTCCCAGACCAGGTGACCAGGGAGGAGTTCAAGGCCTTGATCGAGGATGCTGGCTTTTATAAGGTCCAGTTCCAGAACCTGACGGCAGGGGTGGTGGCCATACACTCCGGGTTCAAACTCTGAGGTGGTCTTTCTGGAGCTGCTTGCCGTCAACCCAGAGATTCACATGCCAGCTCTGGAACCAGCACCATTGCAGAGCTCAGCTGGAGCGGCCAGACAAAACGAACTGCAGACTGAAAGCCTGCTGTCAGGGTCCTGTCCCGGCTCTGGTGGTGGGGAACAGTGAGTTCTGAGAGTGTCTTCAGTAGACATGCTTGCACACTGCTGTATTTCTTGGAAACAAAAAGTTACTGGATTGTTAACTGGATTCCAGTAGTTAGCGGGAGTAGAGAGTTACACCATGTATAAAGGACAAGTTGGAACtggtacaatatatatatatattcacagtttCCTGATACTTGCGGAAAGCTTTACATCAAAGGCATAGCACACCATTTCCATTTGATTAAAGCTTTAATCGGGCCTGCATGAGAGGTTTGACTTTGACTGGACATGGAAAATAGGAGACATGCAATTCAGACCTATTGTCAGTTTAGGTTTTTCTAATATACTGTATCAACTtcaatatttgtgtatatatatagtatatttcaTGCCAGATTCCTCACCCCATTTAAACAGTAAATGAAATGTGAGTAACAGTGCTGACGTGTACTCCACCAGCTTGTAGcttgttgatttaaaaacaaatgggtAAATACTCTTAATTACGGTAAATTACCTTTATTACAGAGCTGCAATATAGCAAAATTGAAtttctgatgtatttttcaGTGATCTGATATATCTGGATTGTGTAAGAATTATTTAGTGCTGCTACAAAGGCCCTTCCTGACACTACTGTCTGTTGCAGCTTTACAGACAACAATGACTTTGTTTCGAACAGCCAGAGAAGAGGCATCAGGTTTCCAGTCCTCAGTGGGGATGACAGACTCTTTTTAAGGGAAATGACAGCCTCCCATTGATCACTGAGGGCTGCTGTACTTGGATGTACTTTCTGTATTCAGTGCCACTGCTGATGCACACAAACACCATGAGAAGCTGTAACAGGATACAGCAGAGCTGTCTGCCTGAGAGACTAGGAAGTACACCAACTGCAGGAGCCACTAGCCAAAGGACTCGCCACACATCCCAGTAtaaatttaaatgcttttacaattattaaataaaataatttaactatgccgtttgtttctttgaaacaaaaaaacaccaaacagaAGACTGAGACCGaaccaatttaaaaagacaattgtAGTGCCTGTTAATTCAAAATACTAAAACTTGTTTCCttacaaattaaaccatgaaAAGTTCAAACTCTTCAgttactgtatttgtattggaCTGATACAACAGTATTTGTATAACAAGAGACTTTGAGGAACACATGAAAGGTACTAAAAATAGAGGTTCTGTTGGGAAACTAAGTTAAACTGCCCAATGTTTAATGACAAGTTTGTACGTCACCCATGGTTAGAGTTAATTGCAGTCATCGAATTATCAGaaactattttgaaaaataatataatgaattaCTGAGTAACCCCAAATGGCTCACAATTATGTATCATGATGGGGATGTCTCCCTGCGGTTGACCAAATAAGTGTGGACAGTAACCATTCTGAGCAGATGGGCCTTTACTGACTGACTACTGCAGAATGTAGCGTCTAGTTGCTGCATTTGCCCCCAGGTTCTCAGGGAAATATTCAATTGGAATGAATCATATTtaggcttttatttatattgttaatcaTGAAttattacaacattaaatcTGTCTTGTTATAGTTCAGGctatgttgaaaaaaaaaaaaaaacatctaaaagaGCCCATATCCTTTCCATCTGTAATGTTTCTAGTTTATTATATTGTGCCAATATGTACAccttttattctgaaatcactGTTATAATCCAGTTAGGTTTTGTCATTACTGTTAATTTATCAAAcacttgtgttttaaaaagaaagaaaaacactcccctgtattaatttaacttgtgaACAAAACTACTTTAACCAATTTAGCCAAAGCTACATGGTATCCAATGGCCATTTGAGAAAGACCCACCTATTcaggtaaatgtatttttgttattcaatATAAGGCGTTTAAAGGTATTTTAAGGAGAAGGATAAACTGACAGTAGTGCTCAGAGCCACACACCTACGTTACCCTGAATCTGCATTACATACTCACACAGAGGCACCAGATGTTTTCTAAAAAAGACTTTTATTTGAGGAGCACGGTTTCTTTGCTGtatagaaaatgaataaaaataaatactagtaTTTGATGCATGGACATTTCTAccagtaagggaaaaaagtgaaGCAGCACAGAAATGTGGAGGTCCCTGCACTGTGAATGCCAATGAGCCGTCACAGAGCTGGAGCTCCGCAGAGCAGTCCGTCTGCTGGTGCCTGGAACAGGGATGTTTTGGACTGTACTGCGGGCCACTGGGTTAGTGTCTTTATCCTGACTTGAACAGAAGAATGGCCACCTGCCCCAGGTAGAAGTAGATGAAGTGCTTGGTCTCATGGGTGACATAGCTGCCAAAGTTCCTGCCCACAATGCAGTGCCAGGTAGGgttgtattttttATGAAGTACCTTCTTGATGTATGCTGCTATGTCCTTCTCAATGTTGTACTTCTCAAGAGCCTGGGTGGCACACTCCACAGCGTCCTGCTGCATATCCTCAGACATGTCTGCGTTTTTGATGACGGCTTTCCTGTCAGACATGGTGCCCTGCAGTGTTGCTGCTACTCTTCCCGTTGTCTGATCCGTCGCCTCCACTCTATAATTGCGGTGTCCGGCGGTGGCTGAGCAACG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K06127 COQ5; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146648 lncRNA downstream 43069 14095291 ~ 14100107 (-) True G117066
TU146575 lncRNA downstream 176907 13897500 ~ 13966269 (-) True G117015
TU146572 lncRNA downstream 253073 13887421 ~ 13890103 (-) True G117012
TU146570 lncRNA downstream 255809 13886309 ~ 13887367 (-) True G117011
TU146497 lncRNA downstream 455062 13645368 ~ 13688114 (-) False AMCG00018528
TU146724 lncRNA upstream 80410 14232796 ~ 14233624 (-) True G117122
TU146737 lncRNA upstream 93032 14245418 ~ 14248073 (-) False AMCG00018555
TU146857 lncRNA upstream 159872 14312258 ~ 14399555 (-) True G117221
TU146864 lncRNA upstream 169699 14322085 ~ 14408949 (-) True G117223
TU146870 lncRNA upstream 205049 14357435 ~ 14402346 (-) True G117227
AMCG00018548 mRNA downstream 52976 14089796 ~ 14090200 (-) True AMCG00018548
AMCG00018545 mRNA downstream 80056 14041641 ~ 14063120 (-) True AMCG00018545
AMCG00018546 mRNA downstream 106544 14021055 ~ 14036632 (-) True AMCG00018546
AMCG00018535 mRNA downstream 227221 13903619 ~ 13915955 (-) True AMCG00018535
AMCG00018532 mRNA downstream 285586 13851411 ~ 13857590 (-) True AMCG00018532
AMCG00018541 mRNA upstream 1137 14153523 ~ 14158352 (-) True AMCG00018541
AMCG00018542 mRNA upstream 9603 14161989 ~ 14172891 (-) True AMCG00018542
AMCG00018543 mRNA upstream 21715 14174101 ~ 14178312 (-) True AMCG00018543
AMCG00018544 mRNA upstream 30107 14182493 ~ 14184291 (-) True AMCG00018544
AMCG00018557 mRNA upstream 48710 14201096 ~ 14202287 (-) True AMCG00018557
TU146385 other downstream 887407 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2231840 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 2940288 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 3074858 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 3571174 10565795 ~ 10572002 (-) False AMCG00018431
TU146918 other upstream 351017 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 583752 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 1346276 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 1346276 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2856512 17008898 ~ 17009301 (-) True G117784

Expression Profile