RNA id: AMCG00018542


Basic Information

Item Value
RNA id AMCG00018542
length 4056
RNA type mRNA
GC content 0.60
exon number 22
gene id AMCG00018542
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14161989 ~ 14172891 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTTTGGTTccgcagagggagagaggatagACGGCCGGAGAGAGCTGATCAGGAGGAAGACAAAGCAAGAGGAAGGAGAATTACAGCCCCACTGCCAGCACAGGGCCACCACAGAGAGACAGTGCAAAGACATGAAGGAAACCAGAAGTGAGGACCCTGCTGTGGAGCCCTACAGCCTGCGGGCAGTGCAGTCTCACCTGGCTCAGGTGCAGAAGCTGCTGCGCGCGGGGGGGGTGCTGGACAGCCTGAGGGAGGGACATTCGCCGTCCTGCCTGAACACCGTGCTACAGGGGCCGACCACAGAGGCAACCCCTGCTGGCCATAATGGGCGAAGTTCCCGCAGGCCCGCCAGCGATGCCCGAGTCGAGCCCCCAGCTGACCCCCCTGAGTATGTCCTGCCTGGATCCCGGGAGCGCCCCCTGCTGTGGCTGCAGCCTTCCAGCCCCCACACTGagGCCCCACCCTGCCTGCTGGATCTGTCACTTAGCCGGTGGAACCCACCCCCAGGAAACAGGAAACTACAGGGAGATCTACTGTACCTGTCTGTTTGCACACTGGAGGGGAGGAGAtgtgacatcacttcctgtCCAAAGGGATTCTACCTCAACCAgtCCACAGTGGAGCAGTTTGACTCTTGCCCTGCCTCACCCTCCCTGCTGTGCCACTGTCTGGCCGACCTGCTGAGCCAGCTGAGCCCTGGTTTCAAGAAAGGGCTTGCAGCGCTGAGGAGCAGACCCCAGCGCCTTCCCTTGGAGATGATGGCTACGCCCTATCGCACGCTGAGCTGGTTGGCCCCGCCCTGCCCTCACCGCCCCCTCCATGACCCCTGTGGCTGCCGGCTGGGGCTGGATGGTCACACACCTGCACAGACTCCAGACTGGAACGAGGAGCTGCAGGCAGCGAGAGATCTGCCCCAGAGCAGCCGGGAGGAGAGACTACTGAGAGCCCAAGCCCTACTGCAGgtgaacaGTGGGTTTGTGTGGGCAGCAGCCCAGGCAGCACAGGCTGTGATTGACGGCTGTGTGGCTCCAATCAATGCGAGTGAGGATCCCCACCTCCATGCCTTcatgtgggggggggtgttccTGAGCCGGGGGGGCGAGACAGGGCTGCTGACGGGGGAGCGGGGGGTACGGGCAGCGGCCAGGCTGGAGCTTGCAGGGGTGCAGGCTTACAGCGATCTGGGGGGGGCGGCAGGGGTGGCTGGGGGGCTGCACACACTGCCCACAGCCGTGGTGGACTACAGGGGGGTGCGCCTGGCAGCCCAGGGCCTGGCCCCTGGCTCACTAGAGGAAGATGGGGGGACAAGGCTGCTTTACGGGCTGTCTGTGCCCCCCCAGGAGGGCACACCCCGCAGGAGGCTGCTGGAACTGCTGGCACAGGCGGCCAAGGGGCTGGGGCTGCAGAAGCATAGTGTGCTGTCCCCCCGTGGCCATGCTGTCCCACTCTTCTCCTCCACGCTGACCCGTGGCCTGCTGGGTGCGGACGGACGCTTTTACATCACTGACCTGTCCCGCAGCCTGCCCCCCGATGCCAACTTCCACCCGGGGGCCAGTGACACAGAGGGGCAGGGGAAGGCAGAAACGGATGGGGAAGCAGAGGCGCAGCAGAATGGAGAGACAGAGGTAGTGGAGGCAGGGGAGGAGGGCTGGCCCCTGGGGTACTCCTCGCTCGGGCTGCCCCGCCTGTTCCCTCACCACCTGTGCCGTCTACGCCCAGAGCTCGTCAGCGCCTTCATACAGCACAAATCTTCAAACATCTGTACTAACTGCCTatctttgtctgtttgtgtgtctccaGGTGAACAGGGCGGAGTGGAGACAGTGAGAGCCGTGTGTAAGGAGTTGGGCTCAGTTAGTGACATCATCTTTGAGATTCGCTTCAATCCTGACATCTACTCACCAGgtgtgcagtTCCCGCAGTCGGAGAGTGGGGCGGTGCGTGTGCAGGAGAGGCTGCTGCGGGAGGCTGCAGTGTTTCTGGTGACTAAGCAGATCCCTGCCTTTGTGGCAGACTGCCTGCAGCGCCGGGTGGCTCCATTAGATGGCTCCTCACTGACCTGGGTGCTGCACCAGAGGGGCATCAACATTCGCTACCTAGGGAAGGTGGTCCGGGCTGTCCACCAATCACAGCACAGTGAACGGCTTACACATATCACCAGTAGCCCTGCCCCCGTGGCGGAGGAGCCCAAGCGCCGGTCTCGAAGGCGTGGTCGGGGTGTGACCGGGGGAGTGGTCTCGGACAGCATGGGTTGGAGCATGCTCAGTGGGGCGGAGCTGTGGTGCCTGATCAGTCTGGACGCCCGAGAGACCTACGACCTCGAGGATGACCTCGGTTCTAGTATTGACCACCTAGTGGAGCAGTACAAGATCCAGAAGTTGTCGGTGCTGAGAGAGCTGTGCCTTAAGACGGGCATTCAGCTCCAGCTCAGGGAGTACAGTCTGGACAGTCGCCACAAGCCACCCATCACCCCAGACGACATCCTCAACATCTTCCCCGTCATCAAGCACCTCACCATGACAACTGCTGATGCCAGTCAAGTGTTACGCAGCGCAGAGGCAAACATGCAGAAAGGCCAGTTGCTGGAGGCCTATGAGCAGCTGAAGGAGGCAGTGTTCCTGTTCACACGTGTCTGTGATGACCTGCACCCTGAGGCGTGTGCCTGCCTCAGCTTGCTAGCACGGGTCGCCCACATCCTTGGGCACAGTGCAGAGCTCAAGGCAGTGCTGATCAGTGAGCGAGTGCTTGGGTTCGACCATCCCAACACCATCCAGCAATACGCTGTGCTGGCAGTCTATGTGTGTGCGGGGGGCGAGTCGGCGCTGGCGAGGAGGCTGCTGTACCGTGCACGGCTCCTGCTGCTGGTTGTCCACGGAGAGGAACACCCCTACACTGCCACCCTGGATTTCTTAAGGAGTGCGCTCAGACTCAACACCAAATTCTGTGGCAATGAGGATCTGCAGACTGCGCTCAGTCATCACCTCCTGGCGCAAGCGCTGTGTACTGTGGGGGAGTATCGCAGCGCAGTGACCCACGAGAGGGAAGCGCTCGCAGTGTACCAGGCACAGCTTGGGGATGATCACCAGCGGACGAGGGTGAGCTCAGACTTCTTGCGAGCCATTACCCAGCAGGCTGTGCGTGTGGAGCGCTCCCTGCGGCAGGGAGGTGACCCAGTTGACATAATGCCTCCTCAGATCCTGGCTCCCACAGTGGAGAACATCCTGGAGCAGCTGGCCGTGCTCAATGGGATCCTGAGAGTCACTCCTGGTAACCTGACCAAAGAGATTAAAGACAAGAGCATCACACCCCTCCCAGATGTGAATGGCCCTGTAGCCAATGAGAAAATGGCAACAGCAGAACCGTCCATTGAAATGAGAGAGTCACAGAGATCTACACTGCCTTCCAATGGTGAGACTGCATCGGAGGTGCCAGCCAATGAGGAAAAGGCACTGAATGAAGAACTGGCCAATAAGGAAGCAGAGGTTAAAGCCACAGCCAATGAAAATGCAGGTGGAGAGAAAGGCAACCCTCCACCACACCAAGAAGAAGCTGCAACCAATGAGATGACAGCCCCACAAGATCCAGCAACTCACAATCCAGGCTCAACAGAAATGGCCAGTGAGGGACCAAACCCAACAGCCAATGAGCAGTGAGCTGGGCAGAGAGGAGTTCTGAACAGATCCTCTACACTCCCCTCATCAGATCTAAACTACTGATATCACAGCGCCTTAACCTTAGCCACTCTGCCAGGGAGAGGACAAATCCCTGAGGCAGGCTGGACAGCAGCCCACcaccccacaccccacaccccacaccccaCATTCATAACCATGAGAGCCACCGTCCTGCTTTGTGGGCAGTGCAGCGTGTGTGAGCGCACTGCGCACTTTGTGCGAGAGCTGTTTGTGTAGCATATGATTAACCTGTGCAGTCTGTGTCCGAGTGCTTTGTGTAGTGTGAGAGAGTGGGATCCTGGGATTGGGGGTTCATGACATCAGTGTTGCCTTATTGTCTTCATGACCTCTCAATAAAACCAGACTAAATCACCTGTC

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146648 lncRNA downstream 61882 14095291 ~ 14100107 (-) True G117066
TU146575 lncRNA downstream 195720 13897500 ~ 13966269 (-) True G117015
TU146572 lncRNA downstream 271886 13887421 ~ 13890103 (-) True G117012
TU146570 lncRNA downstream 274622 13886309 ~ 13887367 (-) True G117011
TU146496 lncRNA downstream 473875 13648905 ~ 13688114 (-) True AMCG00018528
TU146724 lncRNA upstream 59905 14232796 ~ 14233624 (-) True G117122
TU146737 lncRNA upstream 72527 14245418 ~ 14248073 (-) False AMCG00018555
TU146857 lncRNA upstream 139367 14312258 ~ 14399555 (-) True G117221
TU146864 lncRNA upstream 149194 14322085 ~ 14408949 (-) True G117223
TU146870 lncRNA upstream 184544 14357435 ~ 14402346 (-) True G117227
AMCG00018541 mRNA downstream 3637 14153523 ~ 14158352 (-) True AMCG00018541
AMCG00018540 mRNA downstream 9603 14143176 ~ 14152386 (-) True AMCG00018540
AMCG00018548 mRNA downstream 71789 14089796 ~ 14090200 (-) True AMCG00018548
AMCG00018545 mRNA downstream 98869 14041641 ~ 14063120 (-) True AMCG00018545
AMCG00018546 mRNA downstream 125357 14021055 ~ 14036632 (-) True AMCG00018546
AMCG00018543 mRNA upstream 1210 14174101 ~ 14178312 (-) True AMCG00018543
AMCG00018544 mRNA upstream 9602 14182493 ~ 14184291 (-) True AMCG00018544
AMCG00018557 mRNA upstream 28205 14201096 ~ 14202287 (-) True AMCG00018557
AMCG00018556 mRNA upstream 32430 14205321 ~ 14206123 (-) True AMCG00018556
AMCG00018554 mRNA upstream 35545 14208436 ~ 14223317 (-) True AMCG00018554
TU146385 other downstream 906220 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2250653 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 2959101 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 3093671 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 3589987 10565795 ~ 10572002 (-) False AMCG00018431
TU146918 other upstream 330512 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 563247 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 1325771 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 1325771 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2836007 17008898 ~ 17009301 (-) True G117784

Expression Profile