RNA id: AMCG00018548


Basic Information

Item Value
RNA id AMCG00018548
length 405
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00018548
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14089796 ~ 14090200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGATTTATGGGATGATACCGGAGCCCGGGCCTTGTTGGCTCTGAAGTCGGCACCTTGCAGCCCGGTCCGGGTGGCTGTTGCCCCCGTGTACTCGCTGTCCTCCAACCCGCCCGGGATCACACCCATGTCCCTCTCCTCCACTTCGCGGGCCCTAGCGCGACTGGAAGGCCGGGACTTCGAGTTCGTTATGCGGCAGAGGACGGTGACCGTGGGCCGGAACTCTTCGCACGGCTCCGTGGATGTCAACATGGGCCACTCTAGTTTTATCTCCAGACGGCACTTGCAGATTAATTTCGAAGAGCCATTTTTTTACCTTCGCTGCCTGGGAAAGAATGGCGTTTTTGTGGATGGTGTATTTCAGAGGAGAGGGGCTCCTCCACTTCAGCTACCCAGAGAGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009888 tissue development biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146575 lncRNA downstream 123527 13897500 ~ 13966269 (-) True G117015
TU146572 lncRNA downstream 199693 13887421 ~ 13890103 (-) True G117012
TU146570 lncRNA downstream 202429 13886309 ~ 13887367 (-) True G117011
TU146497 lncRNA downstream 401682 13645368 ~ 13688114 (-) False AMCG00018528
TU146648 lncRNA upstream 5091 14095291 ~ 14100107 (-) True G117066
TU146724 lncRNA upstream 142596 14232796 ~ 14233624 (-) True G117122
TU146737 lncRNA upstream 155218 14245418 ~ 14248073 (-) False AMCG00018555
TU146857 lncRNA upstream 222058 14312258 ~ 14399555 (-) True G117221
TU146864 lncRNA upstream 231885 14322085 ~ 14408949 (-) True G117223
AMCG00018545 mRNA downstream 26676 14041641 ~ 14063120 (-) True AMCG00018545
AMCG00018546 mRNA downstream 53164 14021055 ~ 14036632 (-) True AMCG00018546
AMCG00018535 mRNA downstream 173841 13903619 ~ 13915955 (-) True AMCG00018535
AMCG00018532 mRNA downstream 232206 13851411 ~ 13857590 (-) True AMCG00018532
AMCG00018531 mRNA downstream 257411 13783853 ~ 13832385 (-) True AMCG00018531
AMCG00018540 mRNA upstream 52976 14143176 ~ 14152386 (-) True AMCG00018540
AMCG00018541 mRNA upstream 63323 14153523 ~ 14158352 (-) True AMCG00018541
AMCG00018542 mRNA upstream 71789 14161989 ~ 14172891 (-) True AMCG00018542
AMCG00018543 mRNA upstream 83901 14174101 ~ 14178312 (-) True AMCG00018543
AMCG00018544 mRNA upstream 92293 14182493 ~ 14184291 (-) True AMCG00018544
TU146385 other downstream 834027 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2178460 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 2886908 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 3021478 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 3517794 10565795 ~ 10572002 (-) False AMCG00018431
TU146918 other upstream 413203 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 645938 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 1408462 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 1408462 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2918698 17008898 ~ 17009301 (-) True G117784

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051951 True 3200 mRNA 0.50 9 NC_007114.7 40901743 ~ 40933415 (-)
grasscarp (Ctenopharyngodon idella) CI01000046_03572743_03591418.mRNA True 4459 mRNA 0.46 13 CI01000046 3570743 ~ 3591453 (+)