RNA id: AMCG00018549


Basic Information

Item Value
RNA id AMCG00018549
length 1539
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00018549
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14192138 ~ 14200344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAAATTGTATATCAATAAGAAATGCCTTACatggagttgtttttcttaaagtgtATGTGTGCTACAAGGTCTGCAGCTAAAGAGGAACTAAAAGATCGCATATgccaacaaaatgtatatatatGTGACAGTCTGCCTAAACTGTCTATACCCCAGCAACACAGGTGGAGCAGACCCTCTGGACATCTAAAACTGCCATCCTTGCCTCTTCAGGAGTGAACAGAAGTGTATGTAAACTTCTCTGATCAACGCACTCTACCTCTCCAGTCTGAGTTATTGAAGGGAAACTCCCGGCTGGGCTATTGCTGCCATTTCTTCATGATGGACACAGAGATCAACTATGACCAGTTACAAAACTCAGAACTAAGGAGTCGTCACTATGACAACAGCTACTTCTTCCACACAGGCCGGCGCTGGGGCTATGTGCTGTACAGTGGTCTCCtcgccctgctgctgctgctgctactgatCACTGGACTCAAGTttTCTCAGGTGCAGCAGGAGGTCTCAGACcATTTCTTTGCCAGCTGGCTGGAGAAGCTGCCCAGACAGTCCTTCTGGATCGGGCTGACGGACAAGAACAAGGAATCTGAGTGGGAGTGGGTGGATGGCACAGCCTACAACGACACCCCACATTTCTGGGACGTGGGGCAGCCCGATGACTGGGAGCATGTGGGGTTGGCGGGCGAGGACTGCGTGCAGTTCCACAGCTTCTCATTAGAAACTGCCGACTGGAACGATGGGCCCTGCACGACACGGTCCCGCTACGCCTGCGAGAAGCAGTTGCATTAGAGCAGAGCGCCCCTTGCTACCTGGGAGCTGCACTGCCATGCACAGCTCCCCCCGCCTCACTGCcaacacaacaccaccacaacCCTgtcacaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagatcataatacacatatacagaaTCTCCAATAAGGCCTCAGTTAAAGTCAGACCTTCCACTTCCCTGTAACCACCACACTGACCCTTTTATAGTTGAGGATGTGTCTAACTCCTCCGCAGCTAAACCATTAGAGAAAGAGACCAGATAGATAGTGTTGCACAGTTAttcatataaaacagaaaacagcacagtacagttttattattgcatatgagtatataaataaataaaaacatatttatgtaaatacataacCTAGAGAAGCACATATAGAAAATACCAAGACAGGTTTAACACCTCCCTCCACAAGAATGTGCTCTTCCCAACATGTATATGCACTGGCATCCCTGCCAATATAGAGTACAGGAGACTTGTGAAGCTGTATGTATCGGGAGTCTCCTGTCGAAGTAACTTTACATATGTTATAAAACGTGaggctttgttttaaatgaacaaacaataacatttatcCATTAAACCTTTGTTCTGTCTTTATATGAAACTTGCACCAATGAAGGTGTGCACCCCATACATCCTGCTCGTATTTACATAAAAGTAATAACAATGgtttctgtaataaaacaa

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146591 lncRNA upstream 169332 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 345046 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 352167 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 500771 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 825110 13366640 ~ 13367028 (+) True G116882
TU146732 lncRNA downstream 41773 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 42520 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 44364 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 130497 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 208787 14409131 ~ 14412255 (+) False AMCG00018567
AMCG00018553 mRNA upstream 1071 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018539 mRNA upstream 30400 14159663 ~ 14161738 (+) True AMCG00018539
AMCG00018538 mRNA upstream 46143 14143168 ~ 14145995 (+) True AMCG00018538
AMCG00018547 mRNA upstream 80228 14111704 ~ 14111910 (+) True AMCG00018547
AMCG00018537 mRNA upstream 170072 13997909 ~ 14022066 (+) True AMCG00018537
AMCG00018552 mRNA downstream 30646 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018550 mRNA downstream 32378 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018551 mRNA downstream 38898 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018558 mRNA downstream 160692 14361036 ~ 14367961 (+) True AMCG00018558
AMCG00018568 mRNA downstream 188682 14389026 ~ 14389346 (+) True AMCG00018568
TU146688 other upstream 1061 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 46560 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 142985 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 169332 14019928 ~ 14022806 (+) False AMCG00018537
TU146394 other upstream 863866 13307898 ~ 13328272 (+) False AMCG00018520
TU146730 other downstream 39154 14239498 ~ 14242037 (+) False AMCG00018551
TU146792 other downstream 144746 14345090 ~ 14347741 (+) True G117178
TU147075 other downstream 575445 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 586279 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 754220 14954564 ~ 14956580 (+) False AMCG00018602

Expression Profile