RNA id: AMCG00018550


Basic Information

Item Value
RNA id AMCG00018550
length 2107
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00018550
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14232722 ~ 14237949 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGCCCTGGTGCGGTGTGTCCCTAAAGGCGAGCCGTAGCTCAAGGCAGCCCTCACATGACATGGCTTGTGATCTGCATTACTCCGTGAGACTGCACAGACGTAAATGAAAGCATGAAAGAAATGGCAAGAGAGTGAAGTAGAGAGGCGGAGAAGCAGAGGTACACTGTGTGCATCCCAGAGCCAGCAGAGAGCAGCCGGGGGAGACCGCGCCGGCACAGCCACCCGACCGTCGCGAACTCATACAGGAAGTGCGCGTCAACTATCACAAAACTGGACGGAGCTGCGCTGCGGGATTACTCTGCGCTTAATACACCGGACACTATTGTGCATGGGACCGAAATACACAACAGTATAACCGTGCAATACAGTGCACTAAACAATACACCtgctgtgctgtgtggtcCTGAGCTCTGGAGGCCGTGGACATACGAGACGAAACAGTCAACAAAGGAGCCGGTGACCCCGGAGGGATGGAGGACcggaggcacagagagagagaggagagcgcactgtgagacacagagagaagcaGGAGGACAGAGAAGACAATGGGGGACACAGCTGCTACTGCAGAGCCCAGATGGTGCAGTGTGTTCTTCCTGTATGACGGGTCAAAGGTGAAGGAGGAAGGTGACCCCACCCGTGCAGGAATCTGCTACTTCTATCCTGTGGAGACGGTGCTGGACCAGCAGGAGGTGCTCTGTGGGCATCTGGCAGGGGTGTGTCGCTGCCTGGCCGAATTGTCCACCGCCCCCCCCCGACTGCTCCGTATGCGCAGACGCAAATTTGCCATCCGGCTGCGTGGAGACTTCCTGTGGGGCGGCAGCAGTGAGCTGCAGCAGATCTATGGCTCTCTGCACACCATAGACACCACGCGGATTGATCCTCTGTTGTTGCTGAAGGCGGCTCTGATCCTGCAGGCGTGTCAGCGCTGCCCCCTGGTGCTTGCCGGCTGCATCCTGTATAGGGGAAGgGTTGTCAGCACACAGATGCCTCCTGGTCTGACGGCAAAGGTGCTGGTCCGCGACTCTGACCCCCAGAGCCAGGACCAGGTGACTCTCGTTAATGGCGAGCCCACCGCCCCCCCTGCTCCCACCTCTCGCAGTGTCTCCATGGCGACAGTGTTCCTGACTTCTGAGGAGCTGAGCTCTCTACAGCGTCTCCCTGTGGACTGGGCCTGCAGgtcccACCCCACTCCTCAGCAGGCCAGCCGAAACAGGAAGTCCCGCCTCCTGTCACGTACTCTATCAGATACCCTTGACCCCGAGCTCAGCCCCCCCACCTGCTTATctgaccccaccccctccccttgCAGTGTCCACACCCCCAGCCCGGACCCCTCCCTCCCTAATGAGGTTGATGCCCTCACCCCTGACTCCTCCACATTGCGAACTCCCATTGGCCAGCTCCCTCTGCCCAGCGCCACACCTTTCTGCATAGGCCACACCCCTCCACCCAGTACACATGAGTCATGTGACCCAGCCATGCTCAACAGTCCAATGTTGCCCCCCGAAGGCTGTGGTGAGGGCAGTGCAATCAGAGAGGGGGGGCTGGGGTGGGATCAGGAAGGGGacacagagggggagagaagagaAGGCAGTTTTGTCATTCTGCAGGACAGGAGGGGGCAGAGGGGGGGCAGTAGTGGCAGTCAAGAGAGTACTGAGAGGGGCAGCGGCAGGGAAGGGGGGTGCATTAATGCTAGTCCTGAGGGCAGTAACAGGGACAGTAGGTGTACAGTAGGGGGCAGTGAGGCCAGGGGGGCCGAGGAGGAGGAGTGCCCCCTGCTGGCATTGCAGCTCTACATGcacagggtgggggggctggtACTCGCCCTGCTGGTGGAGCCACAGTTCAACAGTGACACAGATGCCCCCCAGGATGTGGAGCGTGTGCTGGTGCGTGCAGCTATGTTGCTCCATTCCCACTTCACCTCTAACCCTGCCCTGCGGGAGGCCATTGTCAGGAGCGGGAGCATGGCGGTGTTCGGGGTGCGCAGTGCGGCACAGGAGACCTTGTTCCAGCAGCAGGGGGCGACAGTGAGGAACTCAGCCTGTTCTCACCTCCTGTCACTCCAGCCTCAGTGCTACACAGCACAGGACTGA

Function

GO: NA

KEGG:

id description
K20194 HPS4; Hermansky-Pudlak syndrome 4 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146591 lncRNA upstream 209916 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 385630 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 392751 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 541355 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 865694 13366640 ~ 13367028 (+) True G116882
TU146732 lncRNA downstream 4168 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 4915 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 6759 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 92892 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 171182 14409131 ~ 14412255 (+) False AMCG00018567
AMCG00018552 mRNA upstream 408 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018549 mRNA upstream 32378 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018553 mRNA upstream 41655 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018539 mRNA upstream 70984 14159663 ~ 14161738 (+) True AMCG00018539
AMCG00018538 mRNA upstream 86727 14143168 ~ 14145995 (+) True AMCG00018538
AMCG00018551 mRNA downstream 1293 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018558 mRNA downstream 123087 14361036 ~ 14367961 (+) True AMCG00018558
AMCG00018568 mRNA downstream 151077 14389026 ~ 14389346 (+) True AMCG00018568
AMCG00018570 mRNA downstream 154360 14392309 ~ 14393844 (+) True AMCG00018570
AMCG00018564 mRNA downstream 157054 14395003 ~ 14399115 (+) False AMCG00018564
TU146688 other upstream 41645 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 87144 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 183569 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 209916 14019928 ~ 14022806 (+) False AMCG00018537
TU146394 other upstream 904450 13307898 ~ 13328272 (+) False AMCG00018520
TU146730 other downstream 1549 14239498 ~ 14242037 (+) False AMCG00018551
TU146792 other downstream 107141 14345090 ~ 14347741 (+) True G117178
TU147075 other downstream 537840 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 548674 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 716615 14954564 ~ 14956580 (+) False AMCG00018602

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU166919 False 835 TUCP 0.51 7 NC_047602.1 29903528 ~ 29924206 (+)