RNA id: AMCG00018551



Basic Information


Item Value
RNA id AMCG00018551
length 936
RNA type mRNA
GC content 0.69
exon number 3
gene id AMCG00018551
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14239242 ~ 14242717 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACCCGGGGGTGGATTCACACCTGCGTGGCACTCGCCCTGCTGGGGGCGGCGGGTGCTGGGCCCCTGGTTGGGCTGGGAGCCCGGGGGCACTGGAGCAGGGCAGCGAGGAGACCCGGAGAGGAGAGTGAAGCAGCGGGAGCAGGCAGGCTGGAGTCCCAGGTCAGGGACAGTATGGTGGGGATGCCAAGGCCGAGGCGGCGGGTCAGGGCGCAGGATAGTCTGCAGCACCAACAAGAGCAGTGCGCCCTGATGACAGGCCCCTGGGTGGAGGCGGCTGGCGGCGGGGGGCGGGCCGGGCAGCTGTACCGTCTCAGGATGGTCCCTCTCTCAGCCGAGGGGCCCCGGCGCGCCGTGTTCCCGGAGCAGCCGCTGTTCCAGTTCGTGCGGAGGGTGTACCGCTGCTGCCAGCTCGGCTTCTCCTGCAGGACCGTGAAGGGCATCCAGGGCCGGATGACCGGAGGTAAGAGCGCTTCTCTGTCTTCCCGTCCTCAGCACAGTCTGTCCAGTAGGAGTATCGAGGCAGAGCTGCATCTGCAGCTCTCAAACCCCCACCGCCTGAGGGTGGAGCCCCTGCTGACCTCGCAGCCCAACCACGCCACACGGTTCGCCATGTCAGCTGCAGAGGGGCAGCTGGACTTGACCCTTGACCTTCTGTTCCTGTTCCCGTCGCTGCAGGAGTCCGCGGGGGGGCATGCTGGCCTTCGGATCACCCATCTGCGGCGGGAGGGGGGGCGGGCCTGGGGGGCGACAGGGCAGGAGCTGGGGGGGCTGCAAGAGCCTCCGCCTGTCACCCTAGGTGGGGGCAGTTTCCCGGCACTCGACCCCGAGCTGGGCCTGGCACTGCGCTGTTTCCATGGCGACACAGCGGTGCCCTGTGCTGAACAAGGGGTGCACCTGCTCCACGCCCCCTTCCTCGCCCTCTCCTACAGGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146591 lncRNA upstream 216436 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 392150 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 399271 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 547875 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 872214 13366640 ~ 13367028 (+) True G116882
TU146733 lncRNA downstream 599 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 2443 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 88576 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 166866 14409131 ~ 14412255 (+) False AMCG00018567
TU146814 lncRNA downstream 195727 14437992 ~ 14439091 (+) True G117197
AMCG00018550 mRNA upstream 1293 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018552 mRNA upstream 6928 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018549 mRNA upstream 38898 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018553 mRNA upstream 48175 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018539 mRNA upstream 77504 14159663 ~ 14161738 (+) True AMCG00018539
AMCG00018558 mRNA downstream 118771 14361036 ~ 14367961 (+) True AMCG00018558
AMCG00018568 mRNA downstream 146761 14389026 ~ 14389346 (+) True AMCG00018568
AMCG00018570 mRNA downstream 150044 14392309 ~ 14393844 (+) True AMCG00018570
AMCG00018564 mRNA downstream 152738 14395003 ~ 14399115 (+) False AMCG00018564
AMCG00018569 mRNA downstream 162141 14404406 ~ 14406978 (+) True AMCG00018569
TU146688 other upstream 48165 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 93664 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 190089 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 216436 14019928 ~ 14022806 (+) False AMCG00018537
TU146394 other upstream 910970 13307898 ~ 13328272 (+) False AMCG00018520
TU146792 other downstream 102825 14345090 ~ 14347741 (+) True G117178
TU147075 other downstream 533524 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 544358 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 712299 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2825947 17068212 ~ 17069670 (+) True G117786

Expression Profile