RNA id: TU146688



Basic Information


Item Value
RNA id TU146688
length 823
RNA type TUCP
GC content 0.59
exon number 6
gene id AMCG00018553
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14189003 ~ 14191077 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGGGCGGTGCCCTGCGGTCAGTGCTGACTGTGGTGCGGTCAGTGCTGACAGAGGATAGTGTGGCGTCTGCAGTTCTGTGCGTTAGGTCTCTATAGATTAAGCTCCTTTGTTTGTGGGACAATGGTGCACCCCGCCCCCCTGCTGAGCCGGGGCTTTGAGCCGGGCAGCTGCCACAGGAGGCTTTAAAAGGGCAGCGCGAGAGACTGCCACACTGTCCCTGCAGGACGAAGCACCAACGCAGACCGataaaaTGACTCACCATTGTACTAAGTTCTCTGGCCACTGGAAGatcaTCGTGTGGGATGAGGAGTGTTTCCAGGGCCGGCGTCATGAGTTCACCTCAGAATGCTGCAGCATCATGGAGTTCGGGTTCGAGACGGTGCGCTCCTTCCGGGTGGAGAGCGGGGCCTGGGTGGGGTATGAGCATGCTCGATTCCAGGGGCAGCAGTTTGTGCTGGAGAGGGGGGAGTACCCACGCTGGGATGCCTGGAGTGGCAGCAATGCCTACCACATCGAGAGGATGAACTCCTTCAGACCTATCGCCTGTGCTAACCACCGTGAGTGCCGGATGAGTATTTACGAGCGCGAGAACTTCTTGGGTCGCAAGGGTGAGCTGAGCGACGACTACCCCTCGCTGCCTGCCATGGGCTGGTGCAACAACGAGCTGGGTGTGCTACCAGTACCCGGGTTACCGTGGATATCAGTACATTGTAGAGTGCGACCGTCACTGTGGAGAGTACAAGCACTGGCGGGAGTGGGGCTCCCATGCTCAGACCTTCCAGATCCAGTCCATCCGCCGCATCCAGCAGTGACCCCTTTCNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146591 lncRNA upstream 166197 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 341911 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 349032 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 497636 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 821975 13366640 ~ 13367028 (+) True G116882
TU146732 lncRNA downstream 51040 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 51787 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 53631 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 139764 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 218054 14409131 ~ 14412255 (+) False AMCG00018567
AMCG00018539 mRNA upstream 27265 14159663 ~ 14161738 (+) True AMCG00018539
AMCG00018538 mRNA upstream 43008 14143168 ~ 14145995 (+) True AMCG00018538
AMCG00018547 mRNA upstream 77093 14111704 ~ 14111910 (+) True AMCG00018547
AMCG00018537 mRNA upstream 166937 13997909 ~ 14022066 (+) True AMCG00018537
AMCG00018536 mRNA upstream 203402 13972550 ~ 13985601 (+) True AMCG00018536
AMCG00018549 mRNA downstream 1061 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018552 mRNA downstream 39913 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018550 mRNA downstream 41645 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018551 mRNA downstream 48165 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018558 mRNA downstream 169959 14361036 ~ 14367961 (+) True AMCG00018558
TU146633 other upstream 43425 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 139850 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 166197 14019928 ~ 14022806 (+) False AMCG00018537
TU146394 other upstream 860731 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 933209 13253343 ~ 13255794 (+) True G116832
TU146730 other downstream 48421 14239498 ~ 14242037 (+) False AMCG00018551
TU146792 other downstream 154013 14345090 ~ 14347741 (+) True G117178
TU147075 other downstream 584712 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 595546 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 763487 14954564 ~ 14956580 (+) False AMCG00018602

Expression Profile