RNA id: AMCG00018554


Basic Information

Item Value
RNA id AMCG00018554
length 1619
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00018554
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14208436 ~ 14223317 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCCTCACTCCGCTCGCTCCCCGCTCACTCCCACCGCACAGTCAGCGGCCCTCGCACGGGAACGGAGGCACGAATGGACACGGAAGGGAGCCAGAGCAGCGTATCGTCCGCAGACTCCCCGCACGACCCCTGCAAAATGTTTATCGGGGGGCTGAGCTGGCAAACAACACAAGAAGGACTGAAGGAGTACTTCAGTAAGTTCGGCGATGTGAAGGAGTGCATGGTGATGCGGGATCCCGTTACAAAGCGCTCGAGGGGATTTGGATTCGTGACCTTCGTGGATCAGGCAGGAGTGGACAAGGTTCTGGCGCAGCCCCGGCACGAACTGGATTCCAAAACCattgACCCGAAAGTGGCATTCCCTCGTAGAGCTCAACCCAAGGTCGATGACGCCATGCTCATGTTCGATAAGACAACCAATCGGCACAGAGGGTTTGGATTTGTGACGTTCGAGAATGAAGACGTGGTGGAGAAGGTGTGTGAAATACACTTCCACGAGATCAACAACAAGATGgtgGAATGTAAAAAGGCACAGCCGAAGGAAGTGATGTCACCAACAGGCTCTGCCCGGGGACGGTCCCGTGTCATGCCCTATGGGATGGATGCGTTCATGCTGGGGATTGGCATGCTGGGTTACCCAGGGTTCCAGGCAGCCACCTACGCCAGCCGTGGCTACACAGGCCTCACCCCAGGATACACCTACCAGTTCCCAGAATTCCATTTAGAGAGGACCCCCCTCCTgacaccaccccacccccccgagATCACAGccATTCCTCTGACAGCATATGGACCAATGGCGgcggcggctgctgctgctgcagtggtGAGAGGTACAGGCTCCACTCCCTCTCGCTCTGGGGGGTTCCTGGGAGCCAGTAGCCCTGGGCCAATGGCAGAACTGTATGGAGCAGCCAATCAGGACTCAGGAGTCAGCAGTTACATCAGTGCtgcaagccccgcccccagcaCTGGCTTTGGACACAGCCTGGGGGGTCCTCTGATCGCTACAGCGTTCACTAACGGCTACCACTGAGACAGgcGTTGTCTGCCAGTAAGAAGATGGGGTAAAACCTGCTGTGGTCCAATCAATCTCCTTTTTACTGCTGCGTTCTTATAAACTGCACACGGATTGGCTGCAGCAGCACTAACGTGACCCCACTTCGGACTCCACCCACCGACTGAAGATCATTCTCTTCCTGTTCCTGTACTAACATCACTTCCTCTCAGACTCCTCTTCCTGTCTTCCTTCCTGTAGtcttttatagtttttaaagCTGTTTGTTTGCCGGCGACTTCCTGCCACGCCAGGGTCAGTAGCGCTGTGTAGGTGGCGCGACTCACGTGCGCAGGAGGCGGCACAGTCCTTCCGCGCCTCGCTGTATCTTTACTCtcttccattcatttattttattttaaatttttcttgaggaatattattttaatgtattttatttttttgttttgttttttctttggttgTTATTTTGATGTCAtcgtcgttgttgttgttgctgtcgCTGTCGTCGTTGTTGTTTTGGGTTAATTATTGTATAGTCGGAAGTAACAAAACCATCATCGCCATGATCCCCGGGCTCTGCGCAGCGAGGGAtgcgga

Function

GO:

id name namespace
GO:0007417 central nervous system development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14411 MSI; RNA-binding protein Musashi

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146648 lncRNA downstream 108329 14095291 ~ 14100107 (-) True G117066
TU146575 lncRNA downstream 242167 13897500 ~ 13966269 (-) True G117015
TU146572 lncRNA downstream 318333 13887421 ~ 13890103 (-) True G117012
TU146570 lncRNA downstream 321069 13886309 ~ 13887367 (-) True G117011
TU146496 lncRNA downstream 520322 13648905 ~ 13688114 (-) True AMCG00018528
TU146724 lncRNA upstream 9479 14232796 ~ 14233624 (-) True G117122
TU146737 lncRNA upstream 22101 14245418 ~ 14248073 (-) False AMCG00018555
TU146857 lncRNA upstream 88941 14312258 ~ 14399555 (-) True G117221
TU146864 lncRNA upstream 98768 14322085 ~ 14408949 (-) True G117223
TU146870 lncRNA upstream 134118 14357435 ~ 14402346 (-) True G117227
AMCG00018556 mRNA downstream 2313 14205321 ~ 14206123 (-) True AMCG00018556
AMCG00018557 mRNA downstream 6149 14201096 ~ 14202287 (-) True AMCG00018557
AMCG00018544 mRNA downstream 24145 14182493 ~ 14184291 (-) True AMCG00018544
AMCG00018543 mRNA downstream 30124 14174101 ~ 14178312 (-) True AMCG00018543
AMCG00018542 mRNA downstream 35545 14161989 ~ 14172891 (-) True AMCG00018542
AMCG00018555 mRNA upstream 19228 14242545 ~ 14263154 (-) True AMCG00018555
AMCG00018560 mRNA upstream 42778 14266095 ~ 14288995 (-) True AMCG00018560
AMCG00018561 mRNA upstream 69901 14293218 ~ 14316293 (-) True AMCG00018561
AMCG00018563 mRNA upstream 98014 14321331 ~ 14328617 (-) True AMCG00018563
AMCG00018559 mRNA upstream 109475 14332792 ~ 14359292 (-) True AMCG00018559
TU146385 other downstream 952667 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2297100 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 3005548 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 3140118 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 3636434 10565795 ~ 10572002 (-) False AMCG00018431
TU146918 other upstream 280086 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 512821 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 1275345 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 1275345 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2785581 17008898 ~ 17009301 (-) True G117784

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058512 True 1458 mRNA 0.42 4 NC_007116.7 6617401 ~ 6620005 (+)
grasscarp (Ctenopharyngodon idella) CI01000337_01114730_01123722.mRNA True 1347 mRNA 0.49 8 CI01000337 1114250 ~ 1123953 (-)