RNA id: AMCG00018558


Basic Information

Item Value
RNA id AMCG00018558
length 3409
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00018558
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14361036 ~ 14367961 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGCGATTCGTCGCCATTACAACAACAAGCTTGTGCTCCTGCGAAGCTACGGTTTCTTTCGGGGCGACAAACTTGCCCTCGCCGCGCCCGTTCTCCTCCGCCTGGAGACAGGCTATCTCCCTGCCAGGGGCCGTGGTCTCCCTCCGGATTAACAAAACCAACAATTTAAATCGAGCGGTCGAGTCTACAGGCCACGCTTAGCTGAGCTAAATTCACCCCGGCGCCGCGTCTCTACCTTTACCCAGCTACCTTTCTGCTTTTTTTCGGACGGCCTTGATTCGtcgtttttttcctttctttggtTTGTTGTCAAGATGTCGCCGTGATGGAGTGTCCTCCGTGTCTGGAAGCCATGAACCTGGGCCCCGGCCGCCTGTTCCTCCGCAGTCGCACACTCCCAGCCTCCCTGTCTCCCCAGATCGTTGCCCCGTTTCATGATAGTGGGCTCGTCGGACTGTCCATCTCCGGAGCTCGACCCCTTTATCAGTCTCGTCAGCTGCAGTAtagaaatggagaaaaataccAACAGCAACGCCAACAGCAAAGTCCCGCCCCGATCTGGGTCGGCTGGGCCAGCCACAGGCGATTCTAAACCCAAAACAGacagtAAGAATGGCAGTGGCTCTAAGCAGCGCTACAGTCGCAAGCGTGAGCCGTCCTTCCCCAAGAGCGAGAGCTTCTCCGGCCCACgccgcccccccccacagaaAGGCAAGGCCTTCGACAAGCGCCCCCCCcagaggggagggggtggcCGGCAGTACGGCGGCAATGGGGGTGGACGTAGAGAGGAGGTAGCAGAGACCCAGCGAGCAGAATTCAGCCCGGCCCAGTTCGCCGGACCCAAGAAGATCAGCCTGAACCACCTTCTGAACTTCACGTTTGAGCCACGTGGGGGAGCCCCAGGGGGGGGCGACGGCCATGGCGGCTGGGGGCGCCGCAACAAGTGGGGCCACAAACACAAGCCCTTTAACAAGGAGCTGTTCCTGCAGGCCAACTGCCAGTTTGTGGTGACTGATGATCAGGACTACACTGCACACTTCACTGACCCGGACACACTGGTCAGCTGGGATTGTGTCCAGCAAGTGcgtaTTTACAGCCATGAGGTGCCGTCCTGCCCCATCTGCCTGTGTCCCCCCCTGGCCGCCCAGGTGACACGCTGCGGACACATCTACTGCTGGCCCTGCCTGCTGCACTACCTGTCCCTGAGCGAGCGCACCTGGAGCAAGTGTCCCATCTGCTATGAGCCCGTCCAGAGCAGCGACCTCAAGAGCGTGGTCGCCATGGAGACGCGCCAGTACCTGGTGGGCGACACCATCACCTTGCGGCTCATGCGGCGGGAGAAGGGTGTCCTGGTGGCGCTGCCCAGCCCGCAGTGGATCAAGGTGGAGGAGCCCATCCGTCTGGGCGATGAGCGGCTCAGCCCGTACTCCAAGCTGTTGCTGGCGTCTCGGGGGCAGGTGCTGGAGCAGGTGGTGAGGGGGGAGCGCGCCGTGCTGGAGCAGCAGCTGCTTGAGGAGGAGGGCTGCCCCGAGGCCTGCTTCATACAGAGCGCCCTGCACGAGCTGCAGGAGCGTGAGGCTGTGCTCATGAGGTCCAGCCCAGAGGAGGTCACCCGCCCTGAACCCAGCCTGGCCTCCCTGACCCTGGAGGACCCCACTATGCCCTCTGAAACTGGTCCGGGGTCCACAGGCAGCTCCAAGcCTGTACTGCAGTATTCCTCAGCCTTTGACGATGAGGTGCTCGAGGTCACTGACCTCCCTGACCCTGTGGGCGAGGACTCCCCACTTGAGCTGCCCCCCATCCCCACTGAGCCCGAGCCGGAGCAGAAACCGGATCAGGAACAGCAACCCCATGCCACAGTGGCCCCCCCTTGCCAACGAGAGAGCCAGGGCAGTGGGCCCTTTTACTACTTTTACCAGGCAGAGGACGGGCAGCAGATGTTCCTTCACCCAGTGAATGTGCGCTGCCTGCTGAGGGATATCTGTGAGCTGGCTCTGGATCACCCCCTGCTGTCCAGGGAGACGCTGGACACCTTTGCAGatGACTTGGAGAAGAGGAAGCGTATCCGTCAGAAAAAAGCGAGGGATGAGCGCCGGCGAGAGAGACGCATTGAGATTGAAGAGAACAAGAAGCAAGGGAAATGTGAGGAGAGGGAGCGAGTGTTTGAGTGTGGGGgtgACCCAGAGGTGCACATCGGCCTGGAGAATCTGCAGCAGTTCCCTGCCTTCGGCTCCCCCCCGGCGGACAGCAGCTTCCCTGCACACCTTGACctgctgctgcccccccccccgcccctctgCTCCAGCCCGGCCTCAGACAGCGTGGGTGTGGTGTTTCCCTCCCTGGGGGGCCCCTCTCCTCTGCTCTGTGTGGGCAGCCTGGAGGAGGACGCTCACTGCCCTTCCTTTGCTCAGATGCTGCGTGAAGGGAAAGCCAGGGTGGAGGGCTGGCCCAAAGCCCCCCCAAAGAAAGtggaGGGGGGCTTACTGCCCCGGCCCAGTGTGGATAGCGATGGTGAGAGTGACGGGTCAGACCGGGTCCCGGTGCCCAGCTTCCAGAACTCCTTCAGCCAGGCCTTTGAGGCGGCACTGCTGCAGCTGGATCACGGCCCGCGGGTTGCTCCAGAACCAGCCCCACTGCCAGaGGAGAAAGgagggaagaagaagaagaagaaacagaagcTCCTGTTCAGCACTTCGATGGTTCACAGCAAATAGCAGCAGCTCTCCGCACTGccctccctccatccatcccccatctctcccctccctccatctctcaaACCCCACTGTCGCTAATACTACTGCCTGTATTAATACACAGCCTGTCACTCGCCCCTCGCGCTGCTTTCAGTCCAATACAGCAGGGTCTGAATGTGAGACGGGCCGCCTCCCTCCGCAGTGCCGTCCCCGGCTGGGTTCAGACCCACCACAGTCCGCCGTGTCACACTGTCTGCAGCAGAGACCAAGGACTGATCGCTGGTCCAGTGTGGGCGCAAGATCGGATGATGCAGAATTCTGTCAATTATcctcccctcttcctctcctccactCATTTGTCCTGTTCCTTCTCTCCTGCCCCTCTCCAGTGTTGATAAAACACTCAAATTCTCATGTATTGTTGGTAAAGCTTGATGCAGTGATTTAATTTTCCTCTTGGTTTTTTGCTAGATCTATTTCTTTTGATTTTCGGGGTTGGAAActaatatttaaagtttttttgtttttttttattctctattaattttgttttcattttgaagtgaAAGTTTAGAGTTTAAGGTGACCGAATTTACAAAAGCAGCCAGCCAGCAGACAAGTATgatgcattaataaaaacattatgcaCAAACtacatatgcatttgtttttcctgtgctgGTTTCTTGTGTGTATGAGTcttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146734 lncRNA upstream 115718 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 116833 14242864 ~ 14244203 (+) True G117130
TU146732 lncRNA upstream 118319 14242117 ~ 14242717 (+) False AMCG00018551
TU146591 lncRNA upstream 338230 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 513944 13846890 ~ 13847092 (+) True G116976
TU146746 lncRNA downstream 41170 14409131 ~ 14412255 (+) False AMCG00018567
TU146814 lncRNA downstream 70031 14437992 ~ 14439091 (+) True G117197
TU146834 lncRNA downstream 166002 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 368135 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 406154 14774115 ~ 14775240 (+) False G117379
AMCG00018551 mRNA upstream 118771 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018550 mRNA upstream 123087 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018552 mRNA upstream 128722 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018549 mRNA upstream 160692 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018553 mRNA upstream 169969 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018568 mRNA downstream 21065 14389026 ~ 14389346 (+) True AMCG00018568
AMCG00018570 mRNA downstream 24348 14392309 ~ 14393844 (+) True AMCG00018570
AMCG00018564 mRNA downstream 27042 14395003 ~ 14399115 (+) False AMCG00018564
AMCG00018569 mRNA downstream 36445 14404406 ~ 14406978 (+) True AMCG00018569
AMCG00018567 mRNA downstream 40997 14408958 ~ 14412279 (+) True AMCG00018567
TU146792 other upstream 13295 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 118999 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 169959 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 215458 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 311883 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 407828 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 418662 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 586603 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2700251 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3613249 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU82286 True 292 lncRNA 0.55 1 NC_048565.1 66787911 ~ 66788202 (-)
eurasian perch (Perca fluviatilis) TU82286 True 2081 lncRNA 0.43 7 NC_053117.1 14365232 ~ 14368488 (+)
mexican tetra (Astyanax mexicanus) TU82286 False 628 TUCP 0.53 4 NC_035903.1 988296 ~ 1014461 (+)