RNA id: AMCG00018561


Basic Information

Item Value
RNA id AMCG00018561
length 1728
RNA type mRNA
GC content 0.57
exon number 18
gene id AMCG00018561
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14293218 ~ 14316293 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGACCTGGAAGCCGTGCTCGCCGATGTGAGCTATCTGATGGCGATGGAGAAGAGCAAGTCGACTCCAGCGGCCCGGGCGAGCAAGAAGATCATCCTGCCCGAGCCGAGTATTCGCAGTGTGATGCAGAAGTACCTGGAGGAAAGAGATGAACTGACCTTCGACAAAATCTTCAACCAGAAGATCGGGTTCCTGCTGTTTAAGGATTACTGTATGAATGAGATAGACGAAGCTGTGCCCCAACTCAAGTTCTACGAGGAGATTAAGGAGTATGAGAAGCTGGACTCGGAGGAGGACCGGCTGTGCCGCAGCAGGCAGATCTACGATGGGTACATCATGAAGGAGCTGCTGTCCTGCTCACATtTGACTATGAATGACTTCAGTGTGCACAGGATCATCGGTCGGGGGGGCTTTGGGGAGGTGTACGGCTGCAGGAAGGCCGACACTGGAAAGATgtaCGCTATGAAGTGTCTGGATAAGAAGAGGATCAAGATGAAGCAGGGAGAGACACTGGCACTCAATGAGAGGATCATGCTGTCACTGGTCAGCACTGGGgacTGTCCGTTTATTGTTTGTATGACGTATGCCTTCCACACCCCTGACAAGCTGTGCTTCATCCTGGACCTCATGAACGgaggGGATCTGCATTATCACCTGTCTCAGCACGGTGTATTCAGTGAGAAGGAGATGCGATTCTATGCGGCCGAGATCATCCTTGGCCTGGAGCACATGCACAACCGATACGTGGTGTACAGAGACCTGAAGcccGCCAATATCCTGCTAGACGAGCATGGGACTCATGGGTACATGGCGCCTGAGGTGCTGCAGAAGGGCACGGCGCACAGTCCGTTCCGGCAGCACAAGACCAAAGACAAACACGAGATCGACCGCATGACACTGACCATGactGTTGAGCTGCCGGAGTCGTTCTCAGTGGAGCTCAAGTCGCTGTTGGAGGGTCTGCTGCAGCGCGACGTCACCAGGAGGCTGGGCTGCCTGGGCCGGGGGGCCCTGGAAGTAAAGGAGCACCTGTTCTTTAAAGGGATTGACTGGCAGCAGGTGTACCTGCAGAagtaCTCTCCGCCGCTCATCCCGCCGCGGGGGGAGGTGAACGCAGCCGACGCCTTCGACATAGGCTCCTTCGACGAGGAGGACACCAAGGGCATCAAGTTGTTGGATAGTGACCAGGAGCTCTACAAGAACTTCCCGCTGCTGATCTCGGAGCGCTGGCAGCAGGAGGTGGCAGAGACGGTGTACGAGGCTGTGAACGCCGACACAGACAAGAGTGAAGCCAGGAAGAGAGCCAAGAACAAGCAGCTGGGCCACGAGGAGGacTACGCCCTGGGTAAGGACTGTATCATGCATGGCTACATGCTGAAGTTGGGTAACCCGTTCCTGACGCAGTGGCAGCGCCGCTACTTCTACCTGTTCCCCAACCGGCTGGAGTGGAGGGGTGAAGCAGAGTCTCGGCAGAACCTGCTGACGATGGAGCAGATGGTGTCAGTGGAGGAGACGCAAGTCAAGGACAAGAAGTGCATCCTGTTGAGGATCAAGGGCGGCAAACAGTTCGTCCTGCAGTGCGAGTGGAAGAAAGAGCTCCTGGAGGCTTTCACTGAGGCGCAGAGGCTCCTGCGCCGGGCACCCAAGGTCATCGGCAAGAGCCGTACCGCCGTGGTGGAGCTGACCAAACCCCCCCTTGCCCACCGCAACAGCAATGGGCTGTAG

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0043009 chordate embryonic development biological_process
GO:0055001 muscle cell development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K00910 ADRBK, GRK; beta-adrenergic-receptor kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146737 lncRNA downstream 45145 14245418 ~ 14248073 (-) False AMCG00018555
TU146724 lncRNA downstream 59594 14232796 ~ 14233624 (-) True G117122
TU146648 lncRNA downstream 193111 14095291 ~ 14100107 (-) True G117066
TU146575 lncRNA downstream 326949 13897500 ~ 13966269 (-) True G117015
TU146572 lncRNA downstream 403115 13887421 ~ 13890103 (-) True G117012
TU146864 lncRNA upstream 5792 14322085 ~ 14408949 (-) True G117223
TU146870 lncRNA upstream 41142 14357435 ~ 14402346 (-) True G117227
TU146879 lncRNA upstream 50172 14366465 ~ 14367911 (-) True G117234
TU146892 lncRNA upstream 101072 14417365 ~ 14459293 (-) True G117245
TU146901 lncRNA upstream 160697 14476990 ~ 14477219 (-) True G117253
AMCG00018560 mRNA downstream 4223 14266095 ~ 14288995 (-) True AMCG00018560
AMCG00018555 mRNA downstream 30064 14242545 ~ 14263154 (-) True AMCG00018555
AMCG00018554 mRNA downstream 69901 14208436 ~ 14223317 (-) True AMCG00018554
AMCG00018556 mRNA downstream 87095 14205321 ~ 14206123 (-) True AMCG00018556
AMCG00018557 mRNA downstream 90931 14201096 ~ 14202287 (-) True AMCG00018557
AMCG00018563 mRNA upstream 5038 14321331 ~ 14328617 (-) True AMCG00018563
AMCG00018559 mRNA upstream 16499 14332792 ~ 14359292 (-) True AMCG00018559
AMCG00018562 mRNA upstream 52791 14369084 ~ 14370273 (-) True AMCG00018562
AMCG00018572 mRNA upstream 94210 14410503 ~ 14417254 (-) True AMCG00018572
AMCG00018573 mRNA upstream 117653 14433946 ~ 14437780 (-) True AMCG00018573
TU146385 other downstream 1037449 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2381882 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 3090330 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 3224900 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 3721216 10565795 ~ 10572002 (-) False AMCG00018431
TU146918 other upstream 187110 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 419845 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 1182369 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 1182369 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2692605 17008898 ~ 17009301 (-) True G117784

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004587 False 2392 mRNA 0.53 21 NC_007121.7 44057177 ~ 44198211 (+)
grasscarp (Ctenopharyngodon idella) CI01000158_01691863_01749991.mRNA False 4430 mRNA 0.48 29 CI01000158 1690577 ~ 1749997 (+)