RNA id: AMCG00018563


Basic Information

Item Value
RNA id AMCG00018563
length 804
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00018563
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14321331 ~ 14328617 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggtGGTGTTTGAGCTGGAGTGTTTCCAGGGCCGTCGGGCAGAGCTGTGTGCCGAGTGTAAGGACCTGGGCGAGCATGGGTTCGAGCGGGTCGGCTCGGTGCTGGTGGAGTCCGGCCCTTGGCTGGGGTTCGAGCAGCAGGGTCTCTGTGGGGAGCAGTTTGTGCTGGAGAAGGGAGAGATGGAAATAGTGGACGATGACGTGCCCAGCCTGTGGGCCCACGGCTTTCAGGACCGCGTGGCCAGCGCACGGGCCCTCCACGGCACGTGGGTGGTGTACACGTTCCCGGGCTACAGGGGGCGCCAGTTTGTGATGGAGCACGGCGAGTACACACACTGGAATGCCTGGCAGGCTGCGCTGCCCCAGATCCAGTCTGTGCGTCGGGTTCGAGACAAGCAGTGGCACAAGAGAGGGTGCTTCACCCTGCCAGCCACGCCCACCCCTACCCCCGCCCCAGCCCCTGCCCCCACCCCTGCTCCTGCCCCCGCGCCtGACAGTCAGGAGCACAAGATCGTGCTGTATGAAAACCCCAACTTCGCTGGGAAGAAGATGGAGGTGGTGGACGATGATGTGCCAAGCTTCCACGCCCACGGCTACCAGGAGAAAGTGTCGTCTGTGCGTGTGCAGAGTGGAACGTGGGTGGGTTACCAGTACCCCGGCTACAGGGGCTATCAGTACGTGTTTGAGAAGGGCGAATACAAGGAGAGCTCAGAGTTTGGGGCGCAGCACCCCCAGATACAGTCAGTCAGGCGCATCCGGGACATGCAGTGGCACCAGAGGGGCGCCTTCCACCCTGCCAACTAA

Function

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146737 lncRNA downstream 73258 14245418 ~ 14248073 (-) False AMCG00018555
TU146724 lncRNA downstream 87707 14232796 ~ 14233624 (-) True G117122
TU146648 lncRNA downstream 221224 14095291 ~ 14100107 (-) True G117066
TU146575 lncRNA downstream 355062 13897500 ~ 13966269 (-) True G117015
TU146572 lncRNA downstream 431228 13887421 ~ 13890103 (-) True G117012
TU146870 lncRNA upstream 28818 14357435 ~ 14402346 (-) True G117227
TU146879 lncRNA upstream 37848 14366465 ~ 14367911 (-) True G117234
TU146892 lncRNA upstream 88748 14417365 ~ 14459293 (-) True G117245
TU146901 lncRNA upstream 148373 14476990 ~ 14477219 (-) True G117253
TU146902 lncRNA upstream 149478 14478095 ~ 14478937 (-) True G117254
AMCG00018561 mRNA downstream 5038 14293218 ~ 14316293 (-) True AMCG00018561
AMCG00018560 mRNA downstream 32336 14266095 ~ 14288995 (-) True AMCG00018560
AMCG00018555 mRNA downstream 58177 14242545 ~ 14263154 (-) True AMCG00018555
AMCG00018554 mRNA downstream 98014 14208436 ~ 14223317 (-) True AMCG00018554
AMCG00018556 mRNA downstream 115208 14205321 ~ 14206123 (-) True AMCG00018556
AMCG00018559 mRNA upstream 4175 14332792 ~ 14359292 (-) True AMCG00018559
AMCG00018562 mRNA upstream 40467 14369084 ~ 14370273 (-) True AMCG00018562
AMCG00018572 mRNA upstream 81886 14410503 ~ 14417254 (-) True AMCG00018572
AMCG00018573 mRNA upstream 105329 14433946 ~ 14437780 (-) True AMCG00018573
AMCG00018574 mRNA upstream 109387 14438004 ~ 14443900 (-) True AMCG00018574
TU146385 other downstream 1065562 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2409995 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 3118443 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 3253013 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 3749329 10565795 ~ 10572002 (-) False AMCG00018431
TU146918 other upstream 174786 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 407521 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 1170045 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 1170045 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2680281 17008898 ~ 17009301 (-) True G117784

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000930 True 2645 mRNA 0.44 5 NC_007112.7 44442140 ~ 44448387 (+)