RNA id: AMCG00018564



Basic Information


Item Value
RNA id AMCG00018564
length 1253
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00018564
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14330841 ~ 14399539 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGAATGGACATTAAGGAGAATTATAATACGGCcgataatataaataataataataataataataataataacaacaacgaGAGTAATAATTTCAGATACGAcgcaagattaaaaaaagaactgaACACGGAAGAGCAAACGCAGAGAGACACGGAAGACAAGGCACTGTACATGAGAAGAGGCAGTTTgcagaaatatttataaaatcgTGCAGGACGAGAGTGACAGCGTGTGGGACAGCTGGACGCGGGGCGCAGCTGCACACTGCGGCTCTGCAGGAGGAGGCATTTAAACAACGAGGAAGTATTACTCCTCAACCGAAATAGTTTGcagatttttaatatatatatttatttattttaaatttaaaagtgtACAGAGACTTTTCCCCCCTTCCTTCATACAAACACGTTCCTGCTTATCTCTCTTGACTTTGCAAACGAGCAGACAAGAAATCCACCCAATCATTTCTCTCCACTGaactgctgctgccgctgcacCGGTCGTTGCTGGATTCTGAGACCCGGCTCGGAGGTCTCATGCGGCGGGATGTGGCGGTGTGGGGGCCGGGGCTGGCGGTCGCTGTGCTCTGGCTAGTGGCTGTGTGGGAGCCTGTCCGGGGGGACGGCGGGGGCAGCAGCTCCGGCACGGGCAGTTTGGCCGACCGAGTGATTTGGGCCATTAATGCCGGCGGCGAGGCGCACACAGACATCTACGGGATCCACTACCGGGCTGACCCGCTGGAGGGGAGGGTGGGAAAAGCCTCGGACTATGGCATGCGGTTGCCCATTCTGCGGTCCAGCCCGGAGGACCAAGTGCTGTACCAGACAGAGCGCTACAATGAGGACACGTTTGGGTATGAGGTGCCGGTGCGGGAGGAGGGCGACTATGTGCTAGTGATGAAGTATGCTGAGGTCTACTTTGCACAGTCTCAACAGAAGGTGTTCGATGTGCGTCTCAATGGGCACGTGGTGGTGCGGGACCTGGACATCTTTGAGCGCGTGGGCCACAGCACTGCCCATGATGAAGTCGTGCCCTTCTCGGTGCGCCGCGGCAAGCTGAGTGTCCAGGGTGAGGTGTCCACCTTCAACGGCAAACTGACCGTCGAGTTCGTCAAGGGTTATTACGACAACCCCAAGGTGTGTGCGCTCTACGTGATGAAGGGAACGCTCGATGGTGACAGCCTGATGTTCCCCATCCTGGTTGCTTTCGGGGTCTTCATCCCCACGCTGTTTTGCCTTTGCCGGCTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146734 lncRNA upstream 149685 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 150800 14242864 ~ 14244203 (+) True G117130
TU146732 lncRNA upstream 152286 14242117 ~ 14242717 (+) False AMCG00018551
TU146591 lncRNA upstream 372197 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 547911 13846890 ~ 13847092 (+) True G116976
TU146746 lncRNA downstream 10016 14409131 ~ 14412255 (+) False AMCG00018567
TU146814 lncRNA downstream 38877 14437992 ~ 14439091 (+) True G117197
TU146834 lncRNA downstream 134848 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 336981 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 375000 14774115 ~ 14775240 (+) False G117379
AMCG00018570 mRNA upstream 1159 14392309 ~ 14393844 (+) True AMCG00018570
AMCG00018568 mRNA upstream 5657 14389026 ~ 14389346 (+) True AMCG00018568
AMCG00018558 mRNA upstream 27042 14361036 ~ 14367961 (+) True AMCG00018558
AMCG00018551 mRNA upstream 152738 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018550 mRNA upstream 157054 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018569 mRNA downstream 5291 14404406 ~ 14406978 (+) True AMCG00018569
AMCG00018567 mRNA downstream 9843 14408958 ~ 14412279 (+) True AMCG00018567
AMCG00018565 mRNA downstream 21160 14420275 ~ 14431626 (+) True AMCG00018565
AMCG00018566 mRNA downstream 46105 14445220 ~ 14446081 (+) True AMCG00018566
AMCG00018580 mRNA downstream 77803 14476918 ~ 14478333 (+) True AMCG00018580
TU146792 other upstream 47262 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 152966 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 203926 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 249425 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 345850 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 376674 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 387508 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 555449 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2669097 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3582095 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile