RNA id: TU146778


Basic Information

Item Value
RNA id TU146778
length 1521
lncRNA type read_through
GC content 0.46
exon number 4
gene id AMCG00018564
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14330841 ~ 14399539 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGGAAGCTGGCTTATTTTATAGTAAATTTATTAGGAGGTCCACAGTCTGACACAAGGGTCGGAGTCAGGCTGTAATACATGTatctttaacattaaaaaaataataataatgaaaaaacagattgaaaccctcccagacagacaggaaatGGAGTCAGAATGACAGCAGAATCCAGATCAGCTCATGGGCTGAGAAACGGAGCGTTACGATTCACTTTACACAAAATATtactgaatataaaaaatgttgacAATCGGACTGTGTTTGATCGTAATTCTAGCACAAGAAAATgatcaaaatacagaaatacattccCCAGGAGGTGGGACTTTGAGCAGGGCCTGCTGTAACTAGGGGCCGCTGTTTGTCATTGAGCTGTCACTCAGAGACAGGTGAAGCTGGTCAGTGGAGATTGGAGGTGTCACTCAACAGAGACCAATCCACCCAGCAAGGTGATGTGATGTGTTGCAAATTATGATAAATCCAGAACTAATGCCTACATGTTGTCTAGACTGTAACCCTCTGCatatagtgtatatacactgtacACCTGGTCTATATAGACAGTACACACTGCGAACCTGGAGTATAGACTGTACACACTGTGCACCTGGAGTATAGACTGATGAACACTGCACCGCAGGTGTAAATAGACTGTACACAATTCCTGGCCCAACACTGTACAGTTTCCTGTCCTGCGCTCTCACCTGCACACAGACCTGTCAAAACACACGGCCTGAAAAACATTGACGAAAGCACTACCTGACACACTatctcccacccccccactttTCCCAGACACAGGACAGAGTGCAGAGTGCAGAGTGTGCAGAGGAGGAAAACACAGCAAATTCTTCTCATCTTTCTTTGCGATTATTTGTTCAAGTTGAggagaaaactaaaaagaatATCGTCGtaagaaaactataaaaaagTTTGTTAGATCATCGGTTGCCGGATTTATATTTAGGCTGATTTCTATTTATGTTGatatttccattatatttatatttctatacatgagggggggcggAAGACCGCGGCAACGGCGGTGCCCAAACACCGGGTGCAGTCGGGCCCTCGGACCCCCAACCCCTATGCCTCCGACAACAGCAGCCTGATGTTCCCCATCCTGGTTGCTTTCGGGGTCTTCATCCCCACGCTGTTTTGCCTTTGCCGGCTCTGAGAGAGagagagagagagagagagagagagagagagagacacgaaGATGGAGATGCAGCCCTTGTTTTTGCGCTTGATCGAACTGGAGTCGccgagagaaggagggagggagagtaaGAGAGacactgatatatatacacacacacacgcacacacacacacacacacacactagactGATACACACAGTTGCTGTAGGACTGTGAATCTCCAAGACCGGATTGGCCACGCTCTGCAAGAAGTGGGCATGAACCGTCGCTCTGATTAGCTGCCCGATGCCTCCGTGAGAACTCTGGCTCGTGAGTGTGATGCTTTTCTGAAGGGTGTGGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146734 lncRNA upstream 85523 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 86638 14242864 ~ 14244203 (+) True G117130
TU146732 lncRNA upstream 88124 14242117 ~ 14242717 (+) False AMCG00018551
TU146591 lncRNA upstream 308035 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 483749 13846890 ~ 13847092 (+) True G116976
TU146746 lncRNA downstream 9592 14409131 ~ 14412255 (+) False AMCG00018567
TU146814 lncRNA downstream 38453 14437992 ~ 14439091 (+) True G117197
TU146834 lncRNA downstream 134424 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 336557 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 374576 14774115 ~ 14775240 (+) False G117379
AMCG00018551 mRNA upstream 88576 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018550 mRNA upstream 92892 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018552 mRNA upstream 98527 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018549 mRNA upstream 130497 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018553 mRNA upstream 139774 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018569 mRNA downstream 4867 14404406 ~ 14406978 (+) True AMCG00018569
AMCG00018567 mRNA downstream 9419 14408958 ~ 14412279 (+) True AMCG00018567
AMCG00018565 mRNA downstream 20736 14420275 ~ 14431626 (+) True AMCG00018565
AMCG00018566 mRNA downstream 45681 14445220 ~ 14446081 (+) True AMCG00018566
AMCG00018580 mRNA downstream 77379 14476918 ~ 14478333 (+) True AMCG00018580
TU146730 other upstream 88804 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 139764 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 185263 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 281688 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 308035 14019928 ~ 14022806 (+) False AMCG00018537
TU147075 other downstream 376250 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 387084 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 555025 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2668673 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3581671 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile