RNA id: TU146746



Basic Information


Item Value
RNA id TU146746
length 1013
lncRNA type sense_over
GC content 0.57
exon number 6
gene id AMCG00018567
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14408958 ~ 14412279 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGCGCCCAGGGCGGCACGGAGTGAGTCGGACTCCAGCAGCGAGGAGGACCAGGAGCGGTTTCGCGAGGCGGTTTGGAGCTTCGGAACCAACGGGACTAACGGCGTGCCCAAGCCGGGCCCAACAGAAAGGGGCGACGGTGACCAGAGGGCTGGAGTGTCGCTACAGAGACCAAGCCGGCGTGTGAGGACCGGTGACCACGAGCATGATGGGAACGAACTCCAGACAACCCCAGAATTCCGAGCTCACGTTGCAAAGAAACTGGGATCCGTGCTGGACAGtGTCCTCACAGAGGTGTCGGACACACGGATACACGCACATGCCCCTGCACTGGACTGCGAGGATGgGTTCCTGCTGTTCTCCACCTCAGTGCCTGGTCAGTCTGCAGAGGCCCCCCCTCACCGAACACCACGACGCCCCACCCCCAGCTCCAGTGAGTCAGACAGTGAGCTGGACTCCAGAGTGAGGCAGGCTGCGGTCTCTGTCTCCGACATCCTGCGGCACTCCGCCtgtcccagcatgcacctgTCCGTGCCCCCCTGCACtcaggaggagaaggagaagaagaaaaagaggaggagagagaacgAAATGGTGGAAGAAGGAGAGGGGGTCTCCGAGGAGTGTGCTACAGAAGGCACTGTGGGAGGAGAGACCGACACAGgcaagaggaagaggaagaagaagaagatgatgatGGTGAAGGAGTAGGAGAGGGGGagcagagaggaagaaagacCAACGGGCTGAGAggaaaaagaggagaagaatacaaaaggatgagggaaggagggagagggtgatATAGACAGACTgaccaactctctctctctgagctcctgccagagacagacagacactgactgcagcagtccagtccagtcagtgactctgcagcagtccagtccagtctgcTCCgttccagtcagtgactctgttTTCATGTGTTCCTTAAAGTCAGTGTACAGAAACAGTCTATAACTGGTGTCATTAAAACCTTTTGTAGTGATAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146778 lncRNA upstream 9592 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 163813 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 164928 14242864 ~ 14244203 (+) True G117130
TU146732 lncRNA upstream 166414 14242117 ~ 14242717 (+) False AMCG00018551
TU146591 lncRNA upstream 386325 14020643 ~ 14022806 (+) False AMCG00018537
TU146814 lncRNA downstream 25737 14437992 ~ 14439091 (+) True G117197
TU146834 lncRNA downstream 121708 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 323841 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 361860 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 361860 14774115 ~ 14775240 (+) False G117379
AMCG00018569 mRNA upstream 2153 14404406 ~ 14406978 (+) True AMCG00018569
AMCG00018564 mRNA upstream 10016 14395003 ~ 14399115 (+) False AMCG00018564
AMCG00018570 mRNA upstream 15287 14392309 ~ 14393844 (+) True AMCG00018570
AMCG00018568 mRNA upstream 19785 14389026 ~ 14389346 (+) True AMCG00018568
AMCG00018558 mRNA upstream 41170 14361036 ~ 14367961 (+) True AMCG00018558
AMCG00018565 mRNA downstream 8020 14420275 ~ 14431626 (+) True AMCG00018565
AMCG00018566 mRNA downstream 32965 14445220 ~ 14446081 (+) True AMCG00018566
AMCG00018580 mRNA downstream 64663 14476918 ~ 14478333 (+) True AMCG00018580
AMCG00018579 mRNA downstream 66825 14479080 ~ 14495801 (+) True AMCG00018579
AMCG00018578 mRNA downstream 86344 14498599 ~ 14504059 (+) True AMCG00018578
TU146792 other upstream 61390 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 167094 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 218054 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 263553 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 359978 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 363534 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 374368 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 542309 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2655957 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3568955 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile