RNA id: AMCG00018568


Basic Information

Item Value
RNA id AMCG00018568
length 267
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00018568
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14389026 ~ 14389346 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCCAGGACGAGAAGCGAAGTTACAGAGCAGTGCAGTCTGCGGAGGAGCCGGTGGCAGGGGGGGGCACGGGGGTAGGGGTGGGGGGCATGCCGGGGGCATTCCAGGAGCCCCTGGTGGCGCTGGCACAGAACTGCGCCCTCATGCACAACCTGCTGGGACCCGCCTGCATCTTCCTCCGCAAGGGATTCGCAGAGAGCAGGCAGGCTGTACTTACTGCTGGGTTATGCTGTGACTGGGGCAGTTACTGCTGGGATATGCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146734 lncRNA upstream 143708 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 144823 14242864 ~ 14244203 (+) True G117130
TU146732 lncRNA upstream 146309 14242117 ~ 14242717 (+) False AMCG00018551
TU146591 lncRNA upstream 366220 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 541934 13846890 ~ 13847092 (+) True G116976
TU146746 lncRNA downstream 19785 14409131 ~ 14412255 (+) False AMCG00018567
TU146814 lncRNA downstream 48646 14437992 ~ 14439091 (+) True G117197
TU146834 lncRNA downstream 144617 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 346750 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 384769 14774115 ~ 14775240 (+) False G117379
AMCG00018558 mRNA upstream 21065 14361036 ~ 14367961 (+) True AMCG00018558
AMCG00018551 mRNA upstream 146761 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018550 mRNA upstream 151077 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018552 mRNA upstream 156712 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018549 mRNA upstream 188682 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018570 mRNA downstream 2963 14392309 ~ 14393844 (+) True AMCG00018570
AMCG00018564 mRNA downstream 5657 14395003 ~ 14399115 (+) False AMCG00018564
AMCG00018569 mRNA downstream 15060 14404406 ~ 14406978 (+) True AMCG00018569
AMCG00018567 mRNA downstream 19612 14408958 ~ 14412279 (+) True AMCG00018567
AMCG00018565 mRNA downstream 30929 14420275 ~ 14431626 (+) True AMCG00018565
TU146792 other upstream 41285 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 146989 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 197949 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 243448 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 339873 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 386443 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 397277 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 565218 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2678866 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3591864 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile