RNA id: AMCG00018575


Basic Information

Item Value
RNA id AMCG00018575
length 4587
RNA type mRNA
GC content 0.64
exon number 11
gene id AMCG00018575
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14519852 ~ 14529437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGTCTCGGGCTGCGCTGCCCGCGGACGGAGCCTCGCAGAGACGGAGCCCAAGAGCTGCAAACAGGGACAAATAACCCAGCAGCACCGGGGCGGCCCAGCCCCGTGTGTCCAGGTCATCATGCTGTCCACAGTCCCCGCTGATCTGGGAGGTAGTCAGCAGCTGCCCCTGTCTGTCTCGAACCCCCACCCTCTGCCCCAGCTCTCTCCAGCGCTTTACCGGGAGCGGCCCGGGCAGCGAGGTGGGGGCAGGCGGGGCTCTGACGGAGGGAAGGAGGGGGCTTGCAGAgctgagaggagagagcagcCTGCTGTAGATGATGTCCGGGACACAGGAGGCCCTGTACTGCAGGACCCCGCTCTGGACTCAGTGATCAGCTTGGCTGCCTGTGTGGACAGTGCCTGTGAGGACAGAGGGAGCACAGCAGGACAGGCGGACGGAGAGACGCTCCCAAGCAGAAGGGAGTTCGGGGAGAAGCAGCCCTGTGCAGAGGGTGAGGGTGGTACGGGGGCGTCACACGGCCAGACACTCCGAGACTCTCCTGAAGATATCCTGGAACGATGGGAcacatctcctcctcctcctcctcctcctcctcttccacctCCTGCCTCTGCATCTCGCTCTGGCGGCGAAGCTGCCGAGGTGCAAGCCACGGGAGGGCCGGGTCCGGTTCTGGGAGCTCTGGAGCTTTGTTTGGCTTCCCACCAGGGGGAGCTGCGGCGGCTGTTGGCGGGGTCACTGGGGTTGCTGGGCAGGCGACTGGACAGGATGGAGCGCAGGCTGGACCGGCTGTGTGTGCAGGGAGAGGCAAATGCTCAGGGACTGACCACACTGACAACGCAGCTGGCTGCACAGCTGACCAGGAGCTCAGACACTCGCACAGCAGCCCCCCAGCCTGGTGTCCTGTGTCCTGATGTGGCTGGACAGAGGACAGAGGCCGCCAGCCTTTCACActcagagcagcagcagcagcagcagcagcagcaggaggaggaggaggaggaggaggcggcggcggcggcccaACCTGCCGAGTCACCCTCTTCGTCTTTGTGGCAACCGTCGTCATGGAGCCCCTGTCTCCGTAGCAACCAGCCTGCTGCGGCTGCCGCAGATGGAGCCGTGTCCGTCTGCGGAAGTGCCCCGTCCCTGGAGGATGCCACTGCTACGGACCGGGGGGCTAGCCATATGGATACCATAGAGCCTGACACACTAGAGGAGACTGGAAACTTGCCCAGCCGTCCTGCCCCCGCTCTTGAACTCGTCTCAGTGTTTGGTTTTCCGCCTGGGGAGCAGGGGGCCAAGGATAGCCAGCTCTCGATCCTGGGGGAGGTTGCGGAACCACATGCCCCAGCCCCCAGCCTCACCCCCAGGACAGGTGCCACCCTCCGTTGCCAGACCTGCTCCCCTGTGTGGGACTGTGAGCAGAAAGAGCCTCCCGGACCAGAGCCCCCCCTGATCTGTGGTGCTGGAGATTCTGGTGGCAGGGGGGAGCAGGTTGGCGGCGTCTGTGTGGGACGACTCCCCCAGGAGGATGCCACCCCCCCTGCTTGCACTGACTTCTCTCCTGCGTGTCCCTCCTCTCATGAAGACGACCCCCAACACCCTCTCCGCCCAGACCTTCGCGGGGCAGAAGATGGCAGCCTCGCTAGGACAACGTCTCCgcctctgtccctgtctctctctccgctcTGCAGCTCAGACTGTGTACCCCCCAGAGAAAGGAAGGACCCTCACATGGCACCCCCTCACTGCCCAGAGATAGCTGGACCCATGGCGGGTCCCTTCCCCGCAGGAACAACAGCTGCTGGGGAGGTCCAATGCCTTGGTGAAACGTCGGGTCAGAGCCCTGGGCGACCGGGAGAGCAGCTGCCCATCACTGTTGTACTGGAACAGCAGGACGCAGAGATGCCagctgatggagagagagaaggaggagaggaagaggaggagggccGAGAGGTTGCAGGCGGGTGCGTTCCGGagaattcccagaatgcacagCAAATGGAAAACATGGATTTTTCACAAAAGACTTCTGTAACAGACAGCTGGCatctggaggaggaggaggagcagcagagtgggaggggggcACATAGGGCAGTGGAGGAGTGTGGGGAGGAGGATGTGGGGTTTAGGCAGTCGCTTGAGGCTCCAGTTAATCCCAGAGATCTGTGTGACCTGGACAGCCCTGTCCTGCCCTCAGTTCCTGATGCCTCTGCCGACTCCGGAGTGACCTTGGAGGCAGGTCCCACAGGACAAGGGCCGGCAATGTCCCTTGTCCAGAGCTGTAGCACCGGGACTCACAGTTCTGGTAGTGATACGGACCCCTGGGGCATGGCTGTGAAGGGACTGGAGGGGCCAGAATCAGAGCCACCAGATAAGGACATAGGGTCACTGGGGAGGCTGGTCATGGTCGGACTGCAGTTGGCGGAGGGCGAGGAGAGGAGCAGTTCAGCGGtgcctgtggagagagaggagggggtcCCGGACAGGTGCTTGGGGCTGGACAGCGGTGCTCTCCACTCCTGCACCAATGTAGTGCCTTCCTCAGATAGCAGCATCCACAGCACTGAGTCTGCATCTCCCGGCTCTGACCAGCTTGGGAGCGATTGGCTGCAGTCAGGGGGCGTTGCCCAGAACGCCGGTCACACCGGAGAGCTAACCAGAGGACCCAGCTGCTGCCAGAGTCCCACCCCCAGCCCCCCTCAATTGGAGCCCCCTCCTGCTTGTGCTCCctcttttccctcctcctccactcctTCTTCCCCTTCCTCACTAGATCTGGACCCTTGTGTCCCCCCCTCCTCGTTCCCCATCCCGGTCGGAGTTAAGGGGGTATTTGGGAGGCCCCCCAGGAAGAAGATGCTCATGGAGTCCCGGCAGCAGCCCATGCGCAAgtgcaggggggtggggggtgcccTGCAGTCTCTCCCAGAGCTGCGGTCAGTAAGGGAGGCTACCGCTGTCCTGTTTCTCGTTCCCGACGACTCGCCCTGCTCTCCAGGCTGCTCTCTGACCTCCCACCAACCAGCCTGGCCTCTAGAGTCCTGCAACCCGTGCATGGGGGTCGGTACCCGTTCTTCCTGGGCCCAGACAGACTGCACGCCCCCCAGCCTGAGAAACGGTCTCACAAAATCCCTCCCTTACCCCCCCACCCGCGACCAGTCCTGCCTCTCCCACCTGCTGCAGCAGCTCTCCGAGGTCGCCAGCTCCCTGGtgcccctcccctcctctcctcccgtCCCCTCTTCCTCCAACCAGGTGGTCATGCGCAAGCGGCGTGGTGCCCTGGGGACCTCCTCAGCCCTGCTGTTCAGCCTGGCAGCCAGACTGAAGCCGCTCAGGGCCTGGGGTCTGCGGGGGGGTGGTGGCAGCACTCGCTCACTCTCTGGGAGCAAATGCTGGCCGCCCAAATGGACCACCcacccctcctcttcctcctctcacTCCTCTTCATCCTGGCTGGGCCTGCAAACTTTCCTGGCTCTGTCCTCACCCTGCTGGTACCGCCTTTTGACCCGACACCGTGGCCTAGGCAGCACATGTCAGGAGGCGCACAGACTGTCTGGAGCCCTGTCTACCCCGCTAGCCCTGCCTCCACCCCCCCAGGACAGAGACAACCTGCTTCCTTCCTTGCACTATGCGTTGGCCCCCATTTTAGCATCCTGGGCTGCCCAGTGTCCCCCCCGGCACTGCCTGGCGGACAGCACAGTCATCTGCAGCATGGAGACTGAccacagCTACGCTCGGCAGCCCAGCCAGGTAACCCGGCAGGCGGGGGCAGAGTCAGCAGCCAGTCGTGTGACGGTGCTGGACTGTGTCTCATCCCTGTCTCCATGCGTGCTGTCTGTCCCGCCCTCGCCCCTGCTGTCTCCCCTCCACCTTGTGGAGCCCTTGCCGCtgccatcctcctcctcctcctcctcccttgccCCCCCCAGCCCGGAGAGACAGGGTGCGGAGGGGTGGGGCACCGAGCAGAACACAGTCGATCTATCCGCGCTACCAGCTCCCCCCCATGGGAATGCCACCGAGAAATACCCCCCTACACACAGCCATGCCTCCAGCAGAGAGggcTGTGTGTATGAGAAGAGGCAGGGGCTGCGCTCCAAGCGTGTGTCCCAGATCCGCATCCGGAAAACCGTCCCCAAACAGGACAACAACCTGACCCCCATGGGGCTTCCGAGACCAAAGAGatTAAAGAAGAAGGAGTTCAGTCTGGAGGAGATCTACACCAATAAAAACTATCGTTCCCCCCCGTCCAACAGCAGTCTGGAGACCATCTTTGAGGAGCCCAGGGAGAGGAATGGGTCGCTGCTCTGCATCAGCCAGCAGAAGAGGAAGCGTGTGCTGGATTTCCCGGACTTCACATTGCCGCGGAAACGGCGAGCACGGGCGGGCAGTGGGAGcaacgggggggggggcaccGGCAATAGCAGTGGGACAGGGAGCAGGGTGCGGGGGGGACGGGGCCGGGGTCGCCGGGCAAGGGAGTCCGACGCGGAGCTGGACGTGCGATTGGTCGAGAGGCTGAGTGAGCTGGAGGACTTCTTTGCTCGCAATGGGCTGGAGGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146814 lncRNA upstream 80761 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 107597 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 120313 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 274534 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 275649 14242864 ~ 14244203 (+) True G117130
TU146834 lncRNA downstream 4526 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 206659 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 244678 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 244678 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 244678 14774115 ~ 14775240 (+) False G117379
AMCG00018576 mRNA upstream 833 14511238 ~ 14519019 (+) True AMCG00018576
AMCG00018578 mRNA upstream 15793 14498599 ~ 14504059 (+) True AMCG00018578
AMCG00018579 mRNA upstream 24051 14479080 ~ 14495801 (+) True AMCG00018579
AMCG00018580 mRNA upstream 41519 14476918 ~ 14478333 (+) True AMCG00018580
AMCG00018566 mRNA upstream 73771 14445220 ~ 14446081 (+) True AMCG00018566
AMCG00018583 mRNA downstream 12893 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018582 mRNA downstream 22657 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018581 mRNA downstream 24652 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018577 mRNA downstream 44823 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018585 mRNA downstream 69825 14599262 ~ 14614445 (+) True AMCG00018585
TU146792 other upstream 172111 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 277815 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 328775 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 374274 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 470699 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 246352 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 257186 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 425127 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2538775 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3451773 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile