RNA id: AMCG00018576


Basic Information

Item Value
RNA id AMCG00018576
length 3393
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00018576
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14511238 ~ 14519019 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGAGTGCAGGTCGGAGAGCGTGAGTAAGAACGAGACTTTGACACTCAGACTTACACTTTGAGACTCTCTCCGTCACACACAGATACTCTCAGACACTCAGAGACACACTCTCCGCCAGCCACGCGCTCCCGCGGACCTGTCCAGTTTCTTTTATCGCTGACCAGGCAGAGCCATGAACCTTCAGGTCACCACAGCCGTGCCGCAGGCCGACAATGGCACGCTGGCCATCAACAACCCCGCGGACATCTCTGTCATCGTTATCTACTTTATCGTGGTCCTGGTAGTGGGGCTGTGGGCGATGCTCAGCACCAGCCGCGGCACTGTGGGGGGATTCTTCTTGGCGGGGCGCAGCATGGTGTGGTGGCCGATCGGCGCATCCCTGTTCGCCAGCAACATCGGCAGCGGGCACTTCGTGGGGCTGGCGGGCACGGGGGCAGCGGCAGGCATTGCCATTGGGGGCTTTGAGTGGAACGCTCTGGTCATGGTGATTATCCTGGGCTGGTTGTTCGTGCCAATTTACATCAAGGCCgggGTGGTGACGATGCCGGAGTACCTGAAGAGGAGGTTCGGGGGGCAGCGCATCCGAATCTATCTGTCTGTGCTCTCACTGATGCTCTACATCTTCACCAAGATCTCGgcggACATGTTTTCTGGGGCGATCTTTATCCAACAGGCTCTGGGTCTGGACATTTACGTGGCGGTGGTGCTCCTGCTCATGATCACAGCTCTGTACACCGTGACtgGGGGCTTGGCTGCAGTGATTTACACCGACACACTGCAGACGATCATCATGGTGGTCGGCTCCTTCATCCTTATGGGCTTCGGCTTTAACGCAGTGGGGGGGTACGATGCGTTTGTGGAGAAATACATGCAGGCCAAGCCCTCCGTAGTCACCTGGCCTGGCCTGAATATCAGTGCCCGCTGCTACACCCCCAGCCCCGACTCCTTCCACATCTTCCGAGACCCGCTGACAGGAGACATGCCCTGGCCCGGCCTGGTGTTCGGACTGACCATCCTGGGCATCTGGTACTGGTGCACTGACCAGgtgatAGTGCAGCGCTGTCTCTCTGCCAAGAACCTGTCACATGTGAAAGCGGGGTGCATCCTGTGTGGCTACCTCAAGCTGCTGCCAATGTTCCTCATGGTGTTCCCTGGCATGATGAGCCGGATCCTCTACacagACGTGGTGGCCTGCGTCGTTCCTGAGCTGTGCACTAAGTACTGCGGGACATCGGTGGGCTGCAGTAACGTGGCATACCCCCGGATGGTCGTCGATCTGATGCCCAACGggctGCGGGGGTTGATGCTCTCGGTGATGCTGGCGTCTCTGATGAGCTCCCTGACCTCCATCTTCAACAGCGCCAGCACTCTGTTCACCATGGACATCTACACCAAGATTCGGAGCCAGGCCTCGGAGAAGGAACTCATGATTGCCGGGCGgGTGTTCATCCTGGCTCTGATTGGGGTCAGTATTGCCTGGATCCCCATTATACAGTCATCCAAAAGTGGCCAGCTGTTCGACTACATCCAGTCCATCACCAGCTATCTGGGCCCCCCCATCACCGCCGTCTTCCTGCTGGGCATCTTCTGCAAGAGGGTCAACGAGCAGGGGGCATTCTACGGGCTGCTGGTGGGTCTGTTTATCGGCCTGGCCAGGATGATTGCAGAGTTTGCTTACGGGACGGGCAGCTGTGTCACCCCCAGCAACTGTCCTAAAATCATCTGTGGTGTCCACTACCTCTACTTTGCACTTATCCTGTTTGGCATCTCCTGCATCCTGGTGCTGGGCATCTCCCTGGCCACCAAGCCCATTGACGACAAGCATCTGTACCGGCTATGCTGGAGTCTGAGGAACAACACAGAGGAGAGGGTAGATCTGGAGGTGGATGACtggacaaacacacaagacCAGGAGAGCACTGGGGTGGAGGAGCCGCATGAGGAGCCGGGCTGCTGCAGGAAGGCCATTAATTGGTTCTGCGGGTTCGATCAGGGCTCTGCCCCCAAGCTGAGCGAGGAGGAGCAGGCGGAGCTGCAGAAGAAGCTGACTGACACCTCAGAGCACCCGCTGTGGCGCAATGTTGTCAACGCCAATGGCATCGTGCTGCTCACCGTGGCTGTCTTCTTCCATGGGTTCTACGCCTAGATCCTCtgactgtaacacactgtactgtactgtcatGCAGCTGTTGAATGTAATTCTGACTAAAGCGGGAAACAGAGGCGCTGAAATGTCACACAGCAGCTTCATACGACCTGATTCAAttaaccctgctctggtaccattggggtggggtcacagagaccccatggtaccacagcagggttaaaaTCCTCAGCTTACACTGGGCTGATCCACAACACTGCTCTCAGACACTCTGCTGTGccctgcagtgtagtgtagtgtagagcaatgtgtagagcagtgcagtgtagtgtagtacaggGTAGTAATGTGTaatgtagtacagtgtagtgaTGTGTAGTATTTTAACTGTTAAACTGATTTCTTGGAAGGgtgtattgttttcataataataataataataataataataataataataataataataataataataatactgtcgacaggagtttgtgtgtgtgtgtgtccagcatTCTTCAGTCAAAACACACTGGCCAGTACAGACGAATCAAGGTCTAGTAAACAGCAGCTTCCTCATTCCTGCAATGATTTCCTCTGAAGTCTGTAATCAGTAAATATACCCAAATGAGTCACTGTGGTTTCTTAGACAAATGTTtatgtgtgagtgagtttgTGAATatatcagtgtgagtgtgtgtgtgtgagtgcgtgtgtgagtgtgagtttgtatgtgtgtgtgtgtgtatgtgtgtgtatgggtaaatgtgtgtatatagggCATGCCACGCTCTCCTCAGGGCAAGAGACCCCACAGCCTTTGTTTCAGaggtcttttgtttttatggaaaACTTGTCCACAAACTTCTTTGTAAGCAAGGACTAAGCCCAacgattatttttttattcaaacctGGTTCCCAACCTGCCTGCAAGAGTGGACTTCTCCTGTTCAATCTATTTTCCCTGTTCTCTGGTGTAGTGCCCTATTGTACTGTGCTGTCTGTCACTGCAGCCCCTTGTTGGTACAATTCTCTATTGTAAAAACTATTCCACTGTACTGGACTGGCAGGCGATGTTGTAACAGCACTGTGCTATTGTATTGCACTGTTCTTAGCCCCTGTTGTAACAGCACATgatattagtattttatttttgaattaatcaaagtacaatttgttgatttcttaattgtgaattaaattactttaactAGTCTGCAAGGCCATCGAGGGCCTCTATTCTGTAAACACCTTTttcatattatcattattatttac

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14384 SLC5A4, SGLT3; solute carrier family 5 (low affinity sodium-glucose cotransporter), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146814 lncRNA upstream 72147 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 98983 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 111699 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 265920 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 267035 14242864 ~ 14244203 (+) True G117130
TU146834 lncRNA downstream 14944 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 217077 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 255096 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 255096 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 255096 14774115 ~ 14775240 (+) False G117379
AMCG00018578 mRNA upstream 7179 14498599 ~ 14504059 (+) True AMCG00018578
AMCG00018579 mRNA upstream 15437 14479080 ~ 14495801 (+) True AMCG00018579
AMCG00018580 mRNA upstream 32905 14476918 ~ 14478333 (+) True AMCG00018580
AMCG00018566 mRNA upstream 65157 14445220 ~ 14446081 (+) True AMCG00018566
AMCG00018565 mRNA upstream 79612 14420275 ~ 14431626 (+) True AMCG00018565
AMCG00018575 mRNA downstream 833 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018583 mRNA downstream 23311 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018582 mRNA downstream 33075 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018581 mRNA downstream 35070 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018577 mRNA downstream 55241 14574260 ~ 14588028 (+) True AMCG00018577
TU146792 other upstream 163497 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 269201 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 320161 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 365660 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 462085 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 256770 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 267604 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 435545 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2549193 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3462191 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile