RNA id: AMCG00018577


Basic Information

Item Value
RNA id AMCG00018577
length 5476
RNA type mRNA
GC content 0.56
exon number 19
gene id AMCG00018577
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14574260 ~ 14588028 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttctttctttttttcctttttttctggaAGCCGGCGCAGACGGAGTGAAAGAGGCGcagtgtctctttctcttcGCTTTCTGGCCGAGTCGGCCGGCCGGCCAGCCAGCCCGTCTGCCTGCCGCACTAAACCTACACAGGAAGAAAGACACCAACCGAGCACAATAACAAACGTATTCACAGACTCGCAGAAAACTACAATAACACAAAGTGCACCTTCACAGACGCGCACACCTCATCTCTCGGACAGAGAAGGAAagctattgtattttattcGCAGATATTGGACAACCATGGAGAAGGAAGAGTACCCTGATCCAGGGAATGGGGAGGTAGTGGCAGAGGAGGCTAGGGCTGGTGGGCGGACATCCCCCTACAGATACACAAAGGAGGAGCTCTTGGAGATAAAGGAATATCCCTGTTCCAATGAAAGGCCAAAGTGTCTCTCTGAGAAATACGACAGCGATGGTGTGTGGGACCCTGAGAAGTGGCACGCCTCCCTGTACCCCAGCTCTGAACGAAGTTCCCCAGTGGAGGGGTACAGGAAGGATTATGTGGACGACAGGGCACCCCTGAAGCGCAGAATCGCAGACCCCCGTGAGAGGCTAAAGGAGGATGACCTGGACGTGGTGCTCAGTCCTCAGCGCCGCAGTTTTGGAGGTGGCTGCCAGGGTAACGCAGCACTGGGCCCACCCCCACGCCAGGCCGTCAGCCCCCTGGAGAATAAGGAGAATGAGAGTCTGAGGCTCGGGGGGGCACGCCGAATCGGCAGTGGCAGGATCGTGCCGGCacgtgtgtttgagagagatgGCCGTGGGgacaaggatgtcagggacagaGACCGGGACAGGGAGCGAGACTACAAGGACAAAAGATTCAGGAGGGATTTTGGGGACAAGCGCATCTTCAGCGAACGCAGACGCAACGACTCCTACACTGAGGAGGAGCCGGAGTGGTTTTCGGGAGGCCCCACCAGCCAGTCGGAGACAATTGAGCTCATCGGCTTCGACGACAAGATCCTGGAGGAGGACAAGAGACGCAAGCGATCCAGGAAGCGGTCAGAGTGCGTCAGGGAAGcGGTGGAGTGTAACGGCGGACTGGCAGAGGAGCCTGAGGCGGAGCTGTGTGCGGAGTCGGCAGACCAGCAGGTGCCGCGCGGTGCAGTGCCGCCCAACGCTGCACCTGGGGAGTTCGACTTCAACGAATTTTTCAACCTGGAAAAGACCATGCCAGGACTAGCCTCGATGATTGAGGATGTGCTAGGGGAAGGCTCTGTGTCGGCCAGCCGGTTCAGTCAGTGGTTCAACACAGTCAGCCCGTCGGGCAGCCGGTCCAGCAGCTTGCGCTCCACCCCCCACGAGGAGCTGGAGCGTCTGGCAGGGCTGGAGCGCTGCGTGTCGCCTGGGCATGGCCTGCCCAACTACTTTGCCCCGATCCAGTCGCaggaagagaagaaagagaaggtCGACATCTTGGAGCTACTGCAGCGTGCCAAGATTGACCTGAAGCCCCTGTTGTCCAGCTTGTCTGCCAACAAGGAAAGACTGCACGAGAGCTCCCACTCGGGTGTTGTCCTGTCTCTGGAGGAGGTGGAAGTTGGCCTGAAGGGGCTGAAGATGGAAGGTGAACGGCGAGGAGGGGGCAGCACAAGGGGGGGCTGTGGTGGAGGCACCCCCTTCATGGCTGAACACCTGGAGCAGGCCCTATCGGGAGGGGGTGTCCCCGGTTCACGGCCCGCCAAGCCCAGAGACCCTGACATGTCTGCCTTCAACAAGCTGGTCAGCACCATGAAGGCAAGTGGCACACTGCCCAGCCACCCCAAGGCCAATCAGACGGCAGAAAGCCAGTTCATCCCTGCTGCAGAGGCTCCAGTCCCGCAAGCACCGCAAAAGAACATCCTGCAGGAGATTCTGCGTCCCCAGGGCCCCCCCCGCTCTGGCTCCCCCAGCCTCCTGAGCAGCCTGCTGGGGCAGCGTGGCCCCTCGCCCCCTCTCTTCCCCCAGAGAGCGCCATCCCCAGAGTACTTCCCTGTACATCTGCAGCCCCCAGCAGAGTTCCATGCAGGAGGGCAGGCCATGCTGCCAGACCAGTTTCCTGAGCTGCACAGACCGCTGAGCCCCGGTGCCCCAACGCAGATGGGGTCTCTGCCTCTGGGTGTTGACCAGGCAGCGCTGGAGGCTCTGGTGTTCCACCAGGACCTGGCAAGGCAACTGTACCAGCCAGGTTATGGCAAACTTCCACAGGACAAGAGCCGGGAGCCCTACCGCACCAGGCAGCCCCGAGTGAGCAGGTCTCCTGGGCCCAGTGGACACCGTGCCAGCAGTGGCTCCCCAGGGGGCACAGTCACCAGCATGCTCTCGCCGTCCTTCACACCTACCTCAGTGATCCGCAAGATGTATGAGACTAAGGAGAGGAGCCGAGAGGACGGGGGGACCACGCGCATTGACGGCAGGGAGGACGGAGCGCGCTCACAGGACGACAGCAGTGCCTCCCCCAGCTCCTACCTGGAGGGTCGAGAGTCTAATGGCTCCCCCGGTGGCTTCCCCCGCTCGGCCTGCTCCACACCCCTGTCCAGCCACCCCCGCTTCGCCAAGGAGACCGCTGCCACCATGCCGATGACTGCAGCAACGGAGCCCCCTGCGCCTCGGCCACCCGGCCGCCGCACGCCCACACTGGTGTCCCCCGGCCCCCCCTCACCCTTCCCCCGGCCAGTCTGCCCTGTGCCCCTGCTGTCCCATGTGCCTCTGGTGCGGCAGCCGCCCCCCCAGCTCCACCCCAGTGTGGTGCAGAGGATGCTGGCTCAGGGCATCCAGCCCCAACAGCTGCCCCCTGCCCTGCTACAGGCAGGCATGTTTCCTCCAGGCGTTGACCTTTCCCAGCTGCAAGGTTTGCCCCCACCACTCCTGGGCCAGCCCTTCTACCCCCTGGGTGCGGCAGGTCACCCCCTGCTGCCCCCCCGGGGTGCAGGCACCCCCCTGCACCTGGCAGTCATTCAGCAGCAGCTACAGCAGAGACCAGTGTTACACCCCTCTGTCCCCGGCCCCCACCACCCCAGCAGTCTGTCCCAGAACGCTCTGCACAGAATGGCACACTCGCAGAGACGCGGAGGCAGCCCCCCTGCCGGACTGGCCAAGTGGTTCGGCTCAGATGTGTTGCAGCAGCCCCTCCCCTCGATGCCGGCCAAGGTGATCAGTGTGGACGAACTGGAGTTCAGACAGTGAGAGTGGACATGTGGACACACCCCACCCCCCGCGCTGCACGGACACCACATAGCCACGCGCACTCGGAAGGTCACGGGGACTGGTTTGTTTTCTAGAAGGAatttatttctattgttttctaaatggcAGAACTTCCCAGATCTTTGAGCATctttcaggtgttttttttttttttttcttgttttcctcccccggttttattttaaagagggGGGGGAAGAAACACATGTGCAAGGAGCTTGTTAACTGGGGGACTAGTAATCACCAAATGAGAATCCTATATTCTTGGCAGatgcgtttttttttgtttttttttccctctctctctccccttttccCCCTCCTCCATGCTGTTGTTGCTATGTGCTGGTGAGCCACTGTCCCAGTGCTGTGGTATAGGGTTGGTATTGGGTTGGTTTTTGTTCAGGTTGACTTCTGCAGTAAATATGAAGAATGTATAGACCCAAACTGTACAGCCCATGGGTGTAAATTTAAGTTTCATTTTCCTCCAGTGTACATACAAACGTTGGTTTCTGGGAATGTGAAAAGGGGTTCTGCTGTATATATTGAGTCTCAAGAAGTGCAGCTGGAGTTGTGAATACAGAATGCGAACTTGACTGGAGACTTGCTATTTCGTCCAGTCTTATCCAGTTTGGTATAGAACTGATCTCTTCTTCTCTCCAGACTGATTGGAGTTATTGGCactgaaatctttttttttttgggggggtggtggcggcggcggcggctcttgtacttttattttccacttttctttttcctttgttACTGATCAATACCGAGCTCCCAATGCATGGCCGATCACTTCAGGTCTCCTGAGCAGCCCTTTTGTGTCAGGCAGGTGCTGGAGCATTTCCAGCTGATTTGAGTGGGGAggggattaaataaaatctgctttCTTGGTAACAAATGTGACCAAGTTTGTTTCTCCGGGTGGTCATCTCATGGGTGGCAGCAGTGGAGGGGGGGGCCTGAGTGAGGACCTCCCTGCTGTGTGCTGGGGTGGAGCCGGGTAGCTCCACTCAACCAAGGCCTGTTCCCTGCAGGTTTTGCAGCAGTCCTCAATTTGGCATCTGATGAAAGCCTGCAAACTATGTGCCATATCTCATTGCCCAAACGATTGGTGCAGATAAGTCATTCCGATCTGGGATCGGGATTGAGAAGTAAGGGGGTGTCCGGGAGCTGTGAGGGGACTATGGTGGGTCCCCCAGATGGGCACTGCAGCTTCACATGTAGCAGTGACCATGAAGTGGCACCATTGTGGGCAGTTACAGAAACTTTTGTTGTCGTTAAGCGCTGGAATGGAGTAGAGTACTGTAGCTCCCTAGGTCCTAGGCTGCAGACATGGCTGGGCTTCAGGTGTGGCTGGACTTCACAGTgtgatggattttattttaatgagctgtcctgtttttgttttgttcactttCTTTGCTTTGGTCAGAGTTCTGCAGTTGTTGAGCATCATTCTGTTTTTTCCAGTCCGAGCCCTGCACCCCCCACCTTGAAAAGAAAGCACTGTTCTAACAGGTCCAGaacctatttgttttgtttttttggagaaaatgtaaaaaatatatttgatctaTCAAAGTGCTATTAAATAAAGAGCATAAATAGTCCAATAAAAGTCActcactaaaaaacaaaaaaacaaaaactccctTAAATGCTTTGGAGTATGGCGGTTTTATTGTACTGCTTGATACATTTGGCCTGTCTAGTGCGTGTGCGTCTCTTCTCGTACAGGAGTGACGGCTGTAATCAGGCGCATCAGTGCTGAAGACGAGCAACTGGCTCTCTTGACCGGTCCTGCAGCGGGAGGGTCACAGTCCACTACACGGGTCCCAGAAAAGGCCCAAAGCCACTTGCCTGAATTACCCCTACTCTGCTGGAGCCACAACCTTCTCTCCGTGGGCTTTTATTCCCTCCAACTGAGCTCTTGATTGAACCCTTAACTTGGTCACGGCATAATTGTGAACCTTAAACTAGTGGAGATGAACAGGTGAGCACACGGGCCACAGATGGAGccctccaggagcagggctgggaGACCAAGCCACTTGGAAGCCATcactctgtgctgtgctgccccccaccccacccccaagcTTCCCAGTCCAGTGCAGAGGCGAGTGTTTTGGTGTAGCAACCCTGTCAAATACCTTCCCAATCAAATGTGATTCTGATTTGAAGGGACTGAATtaactgtatttgtgtgtaaataaat

Function

GO: NA

KEGG:

id description
K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146834 lncRNA upstream 40060 14533963 ~ 14534200 (+) True G117209
TU146814 lncRNA upstream 135169 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 162005 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 174721 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 328942 14244708 ~ 14245318 (+) True G117131
TU147042 lncRNA downstream 148068 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 186087 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 186087 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 186087 14774115 ~ 14775240 (+) False G117379
TU147077 lncRNA downstream 186087 14774115 ~ 14777110 (+) True G117379
AMCG00018581 mRNA upstream 16460 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018582 mRNA upstream 20190 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018583 mRNA upstream 26780 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018575 mRNA upstream 44823 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018576 mRNA upstream 55241 14511238 ~ 14519019 (+) True AMCG00018576
AMCG00018585 mRNA downstream 11234 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018586 mRNA downstream 42034 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018588 mRNA downstream 119543 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018593 mRNA downstream 233963 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018600 mRNA downstream 243472 14831500 ~ 14834064 (+) True AMCG00018600
TU146792 other upstream 226519 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 332223 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 383183 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 428682 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 525107 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 187761 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 198595 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 366536 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2480184 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3393182 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile