RNA id: AMCG00018578


Basic Information

Item Value
RNA id AMCG00018578
length 627
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00018578
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14498599 ~ 14504059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGACAGGGAGCAGCTTGTGCAGAGAGCCCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCTTCCGCGATGAAACTGAAGACCTCGGCGGACGGCAACGAGAAGAAGCTGGAGATGGTGCGCGCGTACCGGGAGAAGATCGAGAAAGAGCTGGAGACGGTGTGCAGCGACGTCCTCTCCCTGCTGGACAAGTTCCTCATCAAGAACTGCAACGACTCGCAGTTCGAAAGCAAGGTGTTCTACCTGAAGATGAAGGGCGATTACTACCGGTACCTGGCGGAGGTGGCCACGGGGGAGAAGCGGGCGGCTGTGGTGGAGTCTTCCGAGGGCTCCTACAAGGAGGCCTTCGAGATCAGCAAGGAGCACATGCAGCCCACCCACCCCATCCGCCTGGGCCTGGCCCTCAACTTCTCCGTCTTCTACTACGAGATCCAGAACGCGCCTGAGCAGGCCTGCCACCTGGCCAAGCAAGCGTTCGACGACGCCATCGCCGAGCTGGACACTCTGAACGAGGACTCCTACAAGGACTCCACCCTCATCATGCAGCTGCTGCGAGATAATCTGACCCTGTGGACCAGCGACCAGCAGGATGAGGAGGCGGGCGAGGCCAACAactga

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007420 brain development biological_process
GO:0005737 cytoplasm cellular_component
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146814 lncRNA upstream 59508 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 86344 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 99060 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 253281 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 254396 14242864 ~ 14244203 (+) True G117130
TU146834 lncRNA downstream 29904 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 232037 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 270056 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 270056 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 270056 14774115 ~ 14775240 (+) False G117379
AMCG00018579 mRNA upstream 2798 14479080 ~ 14495801 (+) True AMCG00018579
AMCG00018580 mRNA upstream 20266 14476918 ~ 14478333 (+) True AMCG00018580
AMCG00018566 mRNA upstream 52518 14445220 ~ 14446081 (+) True AMCG00018566
AMCG00018565 mRNA upstream 66973 14420275 ~ 14431626 (+) True AMCG00018565
AMCG00018567 mRNA upstream 86320 14408958 ~ 14412279 (+) True AMCG00018567
AMCG00018576 mRNA downstream 7179 14511238 ~ 14519019 (+) True AMCG00018576
AMCG00018575 mRNA downstream 15793 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018583 mRNA downstream 38271 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018582 mRNA downstream 48035 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018581 mRNA downstream 50030 14554089 ~ 14557800 (+) True AMCG00018581
TU146792 other upstream 150858 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 256562 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 307522 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 353021 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 449446 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 271730 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 282564 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 450505 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2564153 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3477151 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile