RNA id: AMCG00018580


Basic Information

Item Value
RNA id AMCG00018580
length 678
RNA type mRNA
GC content 0.66
exon number 3
gene id AMCG00018580
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14476918 ~ 14478333 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATAacctgcatctctctctccctctccccccgtCTCTCCTCCCACCCTCCTCCTCGCCCCTCTCTCGCCCGCCAGGTGCGTTGGGGGTGCTGGAGGCGGGACTAGTGCCCAGGCTGGTGCTGAGGCTCTCCAAGGAGGGGGAGGCGGTGCAGGAGCTGATCCTGACCACACTGGGCTCCTGCCTTCGGGTGGACGCGCTGCCTGCTCTGGCCAGCGATGGCGTTTCGGCCTTGAGGGTGTCCCTCATCCACCCCTCCCCCCGCGTCCGCGCACCCGCTGCCCGCGCTCTCGTCGCTATCAGTGTTCCTCTGGAGGGGAAGGTGAAGTTGTGTGAGGAGGGGGTGGTCCCTGAGCTGGTGCGTCTCCTTGGTGACGACAAtgcagaggtcagaggtcatgcTGCTGCAGCTCTCATGAATACGGCCGTCACCACACAGGGTAAGTTCCTGGCCCTGGAGGCCGGTGCAGTACCAGCCCTGTTGGTGCTGGCTCAGTGTCCAGGGGCTGTGGAGAGCTGTAATGCCCTGCGCTGCCTGACATGCCTGGCAGAGGCCCCACCCGGCCGCGCCCAACTGCTCCCTTACGTGCCCCTGCTGCAGCAGCGCCTCTCCCACCCCAGCGACATCGTCCGCCAAGCCGCCCTCACCGCCATCCAGGTCATTACCTGGACACCCTGA

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0043226 organelle cellular_component

KEGG:

id description
ko03030 DNA replication

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146814 lncRNA upstream 37827 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 64663 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 77379 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 231600 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 232715 14242864 ~ 14244203 (+) True G117130
TU146834 lncRNA downstream 55630 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 257763 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 295782 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 295782 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 295782 14774115 ~ 14775240 (+) False G117379
AMCG00018566 mRNA upstream 30837 14445220 ~ 14446081 (+) True AMCG00018566
AMCG00018565 mRNA upstream 45292 14420275 ~ 14431626 (+) True AMCG00018565
AMCG00018567 mRNA upstream 64639 14408958 ~ 14412279 (+) True AMCG00018567
AMCG00018569 mRNA upstream 69940 14404406 ~ 14406978 (+) True AMCG00018569
AMCG00018564 mRNA upstream 77803 14395003 ~ 14399115 (+) False AMCG00018564
AMCG00018579 mRNA downstream 747 14479080 ~ 14495801 (+) True AMCG00018579
AMCG00018578 mRNA downstream 20266 14498599 ~ 14504059 (+) True AMCG00018578
AMCG00018576 mRNA downstream 32905 14511238 ~ 14519019 (+) True AMCG00018576
AMCG00018575 mRNA downstream 41519 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018583 mRNA downstream 63997 14542330 ~ 14547480 (+) True AMCG00018583
TU146792 other upstream 129177 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 234881 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 285841 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 331340 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 427765 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 297456 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 308290 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 476231 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2589879 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3502877 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile