RNA id: AMCG00018581


Basic Information

Item Value
RNA id AMCG00018581
length 2065
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00018581
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14554089 ~ 14557800 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATCAGCCCCTCGGATGGTAAGATCCTGCACTTCGGCCGTGTGAAGAACTGCGAGGTGGAGCAGGTCAAGGGCGTCACCTACTCCCTGGAGAGCTTCCTGGGGCCCTACACCTGGACAGACAGCAGGAGCTCTCTCATGTCTGTGAACCCGGGCGTGGCTCGCTGGATTAAGGAGCTGTTCTGCCACAATGAGCGCGTAGTCCTGAGTGGGGAGTGGATGCATGGCTTCTTCTCACTGACCGCCGTCGGGGCCACCAACGAGCTGCACACCAACAGCCCGCGCTACAGCAAGGGCTCCTACAATGACTTCAGCTACCTGTCCAACAACAACCGCGAGGGCGTGAACATGCGCAAGGGCGAGCACCTCGGCGAGTTCAACCTGGGCTCCACCATCGTGCTGCTGTTCGAGGCGCCGCAGGACTTCACCTTCAACATCAAAGCTGGCCAGAAGATCCGCTTTGGGGAGGCTCTGGGGACCAtgtgaggaggagagagagattaggATGGACAGATGCACGTAGGCGCGGGCGGAGGGGCCGGGGGACATGCACTGATGGGACGGAGACATGCACTCACTCGTGCttttttcaaatacacacacacacatatcctttttaaaacacattcaaacacatttcTACATCACATTCTTATCCAAACACGCACTCgtgcacacatacatgcatacacaggaacacacacacacacacacgctaaaCTAGACTACTTGAAGCATTTCTCTTGAATCCCAAGGGGGAGCTTGAATGTACAGGAGTGACACAGAAGCCTCTGCTGCTGCTACTCCCACCACTATCCTCCGCATCCctgcttcctctctctctcgctccctccgTCCACACGACTCCAAACACACACTCTGCTCTCTCGCTGTCTGGCCTCACTCCCACTCCCTGCGCAGTGGCAGTGCCAGGCCTCACTGCGCCGCCGAGAAGAGGAGCGTCcggacacacccacacaaaacaaaggaatggaatgaagaaagaaagaacaaactATTCAAGATATTCCACCAACAgaaaagacattttattttattttggtaataaacaaatgttatgaTGGCATATACTGTATGCACCTTCTATGGTCTTCACTGTTAGTTGTATGCTTGGGCTCAGTTCCACTTCCCATTCCAGAGCCATTCCAAACTCCAGTTCCAGGTCTTTTGGCAGAAGAGACTCGACCGGAACTGAATTGCAAATGGAATTACAAACGGAATTGGAATGGAAGCCCTGGAATTGACCTCAAGCCTggttacttattattattattattgttattgacaAGTTATTTATAGCAACATTACTGCCAATTTTTCTGCCATGCAAGCTTCACTACCAGAAAGGccaaacactgaaaacacaggtaatgaaatgacagaataataataataataatattaataatacctTCACAAAGGAAGCTGAGTGTTGGAGGTTGTTCTGCTGTTGTTACCTTTGGTTTCCCACATCTGAAGTATTGTCAAgttgtgccaaaaaaaaaatctttgcaaaatctattttctttttaaaaaatgaaacaaaaacaaaacaacaaaaaacttttgCTTTTATAACCAGGATTACAGTTTTGCTTTGACTGAGATGCCTACAGTATAACTCATAGTGCTGTTACCTTAACTGAGTTGATTTCTCATGGCGTGTGTGACTGGGactgcgtgtgtgcgtgtgtgtgtgcgtgcgcgtgtgtACACTGTTTTAACTAATAGAATGCTGGGAGTCCAACCTCCCTTCCCCCTCAGAGCTGTCACTCAGCCTGTCaccagaaacaaacagaaatccgATCCTCTGTGGCTGAGTAGCTCCAGTCAGGCGTAGACCGCAGCAGTGCTGATGACAATGCAGGAGCCCAGGGAGAGACCTGCTTTAGTTGCacagtatttttatatgtaCAATGTTTCAAAGGAGATACTTGAATCATGTACTCATTTAACActgcatacatttgaaatattaaaacaatgcaaaagtcATTAATAAATTTTGcctattcttaaaaaaaaataaaatacaaaaaaa

Function

GO: NA

KEGG:

id description
K01613 psd, PISD; phosphatidylserine decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146834 lncRNA upstream 19889 14533963 ~ 14534200 (+) True G117209
TU146814 lncRNA upstream 114998 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 141834 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 154550 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 308771 14244708 ~ 14245318 (+) True G117131
TU147042 lncRNA downstream 178296 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 216315 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 216315 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 216315 14774115 ~ 14775240 (+) False G117379
TU147077 lncRNA downstream 216315 14774115 ~ 14777110 (+) True G117379
AMCG00018582 mRNA upstream 19 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018583 mRNA upstream 6609 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018575 mRNA upstream 24652 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018576 mRNA upstream 35070 14511238 ~ 14519019 (+) True AMCG00018576
AMCG00018578 mRNA upstream 50030 14498599 ~ 14504059 (+) True AMCG00018578
AMCG00018577 mRNA downstream 16460 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018585 mRNA downstream 41462 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018586 mRNA downstream 72262 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018588 mRNA downstream 149771 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018593 mRNA downstream 264191 14821991 ~ 14824758 (+) True AMCG00018593
TU146792 other upstream 206348 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 312052 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 363012 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 408511 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 504936 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 217989 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 228823 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 396764 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2510412 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3423410 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile