RNA id: AMCG00018582


Basic Information

Item Value
RNA id AMCG00018582
length 375
RNA type mRNA
GC content 0.65
exon number 3
gene id AMCG00018582
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14552094 ~ 14554070 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGACTGCAGCTGTGCACTCAAACCCCTGGCCAAGGTGGGCTGGAGGCCGACCAGTAGGTCCATCCCGACCCGGCTACTGTCCCGGGCGTGGGGGCGGCTGAACCAGGTGGAGCTGCCCACCTGGCTGCGCAAGCCCGTGTACAGCCTGTACATCTGGACCTTCGGGGTGAACATGCGTGAGGCGGCGGTGGAGGACCTGCAGCACTACCGCAACCTCAGCGAGTTCTTCCGCCGCAAGCTCAAACCCCAGACCCGGCCGGTCTGCGACTCACACTGCGtggtgagggagaggaggagggagagatgggaggaggaggaggaggaggggaagaggaAAGAGCAGAGTAGGGCAGGGGGACTGCGTCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146834 lncRNA upstream 17894 14533963 ~ 14534200 (+) True G117209
TU146814 lncRNA upstream 113003 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 139839 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 152555 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 306776 14244708 ~ 14245318 (+) True G117131
TU147042 lncRNA downstream 182026 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 220045 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 220045 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 220045 14774115 ~ 14775240 (+) False G117379
TU147077 lncRNA downstream 220045 14774115 ~ 14777110 (+) True G117379
AMCG00018583 mRNA upstream 4614 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018575 mRNA upstream 22657 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018576 mRNA upstream 33075 14511238 ~ 14519019 (+) True AMCG00018576
AMCG00018578 mRNA upstream 48035 14498599 ~ 14504059 (+) True AMCG00018578
AMCG00018579 mRNA upstream 56293 14479080 ~ 14495801 (+) True AMCG00018579
AMCG00018581 mRNA downstream 19 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018577 mRNA downstream 20190 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018585 mRNA downstream 45192 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018586 mRNA downstream 75992 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018588 mRNA downstream 153501 14707571 ~ 14731664 (+) True AMCG00018588
TU146792 other upstream 204353 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 310057 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 361017 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 406516 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 502941 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 221719 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 232553 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 400494 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2514142 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3427140 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile