RNA id: AMCG00018583


Basic Information

Item Value
RNA id AMCG00018583
length 354
RNA type mRNA
GC content 0.64
exon number 5
gene id AMCG00018583
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14542330 ~ 14547480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCGTCCTTGGTGAAGGTGTGCGCCTGGGCTGCGGGCCGCGATGGCAGGCACCCCAATCACCAGCAGCCCAAGAGTCAAAAGATCAAAGCGGCTCTTGGGGAAtGGGCTGAGGTGGGGGCAGCTGGTATCCAGTCGGGGAGTGTCCACCAGCTGCAGGCTGCCTCCCTGGCACTGGGGGCTCGTGTGCGGCCATTGCACCTCCTGCTGGTCACGGGGGGAGGCTACGTGGGCTACTCCCAGTATGGACACTACCAGGATCGTCAGCTGGAGAAACTGGGCATCGAGGTGCCCCCCAGGGTTGCCAACAAGGCTCAGAGAAGACAGCTGCAGAGAGCCCTGCCCCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146834 lncRNA upstream 8130 14533963 ~ 14534200 (+) True G117209
TU146814 lncRNA upstream 103239 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 130075 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 142791 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 297012 14244708 ~ 14245318 (+) True G117131
TU147042 lncRNA downstream 188616 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 226635 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 226635 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 226635 14774115 ~ 14775240 (+) False G117379
TU147077 lncRNA downstream 226635 14774115 ~ 14777110 (+) True G117379
AMCG00018575 mRNA upstream 12893 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018576 mRNA upstream 23311 14511238 ~ 14519019 (+) True AMCG00018576
AMCG00018578 mRNA upstream 38271 14498599 ~ 14504059 (+) True AMCG00018578
AMCG00018579 mRNA upstream 46529 14479080 ~ 14495801 (+) True AMCG00018579
AMCG00018580 mRNA upstream 63997 14476918 ~ 14478333 (+) True AMCG00018580
AMCG00018582 mRNA downstream 4614 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018581 mRNA downstream 6609 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018577 mRNA downstream 26780 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018585 mRNA downstream 51782 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018586 mRNA downstream 82582 14630062 ~ 14646832 (+) True AMCG00018586
TU146792 other upstream 194589 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 300293 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 351253 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 396752 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 493177 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 228309 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 239143 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 407084 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2520732 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3433730 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile