RNA id: AMCG00018585


Basic Information

Item Value
RNA id AMCG00018585
length 2238
RNA type mRNA
GC content 0.66
exon number 6
gene id AMCG00018585
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14599262 ~ 14614445 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCACAACCTGAACACGCAGAGGAAAAATGGAGGCAGATTCTGCGATGTTGTGCTCCGCGTCGGCGAGGAGAGCTTCCCCGCTCACAGGGCGGTCCTGGCGGCGTGCAGCGAGTACTTCGAGTCGGTGTTCAGCTGCCAGGCGGACGGGGACGGGGAGGCGAAGGATTTGGAGATGCACACGATCAGCCCCAAAGTTTTCAAAGACATCCTGGATTTCGCGTACACCTCCAGGATCGTGGTCCGGCTGGAGTGCTTCCCCGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGCGCTCGGTCATCGAGATCTGCCAGGAGGTGATCAAGCAGTCCAACGTGCAGATATTGGTGCCGCCGACCCGGCCCGATCTGGCGCTGTTCCGGACCGGCGGCGGGGCTGGCGACCTGGGCTTCCCGCTGGACATGTCAAATGGCGCCGGGCTGCTGTCAAACGGATCGGTGTTTGGCAGCAACGGGCAGGCGCACGAAGTGGACGCGGGCGGCAGGGCTGGCGGCGGGGCCAGTCTGTCCGGCAACGGCAACCAGTCCGGTATGCCGGTCCTGCAGCAGGTGGAGCGGCTCCCCGTCAACAGTCAAGAGCTGGGGGGCTTCCAGGGCATGGCGGGGGGCTCCCAGgctagcgggggtgggggtaagAGGGGTAGGGGGCGCCCCAAGAAAATCCCACCGATGGACCCTTTACTGTTCGGTAACTCTGGGGTCTCCAAGGACCTGGGCATCTTTCCCTGCGGGCTTTGTGGGAAGATCTTTACGGAGGCAGTGAGACTCAGGCACCACGAAGCCCAACACGCCGCCAGCAGTGGCCTCCACGGCGGCGGGGGCAACCCTGGCGGCGGCGGGGGGACCTCCACGGGTGTCGGGGTAGGAGTCGGCGCCCCCAGCCTGGTCCCCCAGCCGGCCAGCCTGCTGGAGAACGGGCTGGGCCTGCATGTCTCCGTGGACTCGAGTCGCAAACGAGAGCGCACCAGGCGGCACGTTGGTTGTGACATCTGCGGGAAGGTGTTCCGGGACGTGTACCACCTCAACCGGCACAAGCTGTCGCACTCCGGGGAGAAGCCTTACGCCTGCCCGGTGTGCGGCCTGCGCTTCAAGAGGAAGGACCGGATGTCGCCCGACCACCTGAATGGACACATCAAACAGGTGCACACCTCCGAGAGACCTCACAAGTGCCAGACCTGCAACGCGTCGTTCGCCACACGTGACCGACTGCGCTCCCACCTGGCGTGCCACGAGGACAAGATCCCCTGCCAGGTGTGTGGGAAATTCCTGCGCGCTGCGTACATGAGCGACCACCTGAAGAAGCATACGGAGGGGCCGCACAACTACTGCAGCATCTGCAATAAAGGTTTCTCCACCGCCTCCTACCTAAAGGTGCACGTAAAAACGCACCACAACGGCTCCTCAGGGGCGGGCTTGGCCCCCGGCGCCCCTGACCCTCGCCAGGAGCCCGCCTTCCCCGCCGGCCGCACGTACCTGTGCAGCAGTCGTCGGCTGCTGGTTAATTACCCCGAGGTGGACGGGCGGTTCCGCGGCCTGCCCCCCCCTGCCGGgctgcccccctgcccccccccgctGGGCCTGCAGCCCGAGCTGCTCCTGGGAAAGACGGGGGCGCCGTATCTATGGGAGTGCCGGGCGGCCGCTGTGCCAGGGTTTGCCATGCTGGGGCAGAGCCCAGATGGTCAGGAGGACATGGCGAAGTGCCCTCACCAGGACTCGCAGGAGAGCTCCGATGCCTCCTTTGGGGAGCTGTCTGACGGGGGAGACCTCAAatcccaccaccaccaccaacacaaGGGGGCTGCAGCAGCAGCGGCAGTAGCCGGGGGTGgcgaggaggacgaggaggaggaagcaGCGGCCGCGGTGCTGGGTTACGCCGGTATCGGGGGCTCGTCCGGGGGGAGCGGCAGACTGAAACACGGAGACCCCGATAAGAAGCACAGCTGCCCCGACTGCGGCCACTCCTTCCGCTCCAAGTCGTACCTCAACAAGCACATTCAGAAGGCCCATGTGGCGCCGCAGAAGGGGCTGGCAGGAGCCCCTGGGGCACTGGGGGACCTGGCCCCTGCCCTGGGTTCGCCCTTCTCCCCCCAGCAGAACATGTCCCTGCTGGAGTCCTTTGGGTTTCAGATCGTCCAGTCGGCGTTCGCATCCTCGCTGGTGGACGCAGAGGCGGGACACAGTGGGATGGGCCTGGGGGGGAAGTGA

Function

GO: NA

KEGG:

id description
K24383 PATZ1; POZ-AT hook zinc finger protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146834 lncRNA upstream 65062 14533963 ~ 14534200 (+) True G117209
TU146814 lncRNA upstream 160171 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 187007 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 199723 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 353944 14244708 ~ 14245318 (+) True G117131
TU147042 lncRNA downstream 121651 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 159670 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 159670 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 159670 14774115 ~ 14775240 (+) False G117379
TU147077 lncRNA downstream 159670 14774115 ~ 14777110 (+) True G117379
AMCG00018577 mRNA upstream 11234 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018581 mRNA upstream 41462 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018582 mRNA upstream 45192 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018583 mRNA upstream 51782 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018575 mRNA upstream 69825 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018586 mRNA downstream 15617 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018588 mRNA downstream 93126 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018593 mRNA downstream 207546 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018600 mRNA downstream 217055 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018608 mRNA downstream 312717 14927162 ~ 14927524 (+) True AMCG00018608
TU146792 other upstream 251521 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 357225 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 408185 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 453684 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 550109 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 161344 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 172178 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 340119 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2453767 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3366765 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062973 True 2109 mRNA 0.55 11 NC_007117.7 40952031 ~ 40964154 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_09948209_09955176.mRNA True 2761 mRNA 0.52 5 CI01000340 9947770 ~ 9955449 (+)