RNA id: AMCG00018586


Basic Information

Item Value
RNA id AMCG00018586
length 3598
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00018586
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14630062 ~ 14646832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTCCGTCACGGTGGTGTCCTCCGATGTGAAGAGCACGCTGGACCAGGACAAGGAGCTggctggggagggggaggagcaGGCCCCGGAAGTGCCCCCCCCTCGGAATTACCTCATTCTCACCATCTTCACCTGCTTCTGCCCCGCCTACCCCGTCAACATCGTGGCTCTGGTCTTCTCTGTGATGAGCCGCCGTACCGGGAATGCAGCGGCTGAGCGGGGAGCAGGAAGTGGAGGCGGGTCCGCTGTGGGGTATGAAGGTTACTCGGCACCGAGACGCAGGAATGGCGAAATAGGAAAACAAACCCACCGGAGGACGCGGAAACGGACGGAAAACAAGGCCACTGCCATGGGCAACACGAGCAGCGAGCGGGCGGGGCTGGAGCGGCAGGGAGAGAAGGGGCACCGGCGCGACAGCAGGGGGGCCTACGGCAAGGAGGGGGAGCGGCCCCAGATACTGATGGACAGCCCGGAGGACGCTGACCTGTACCATGGAGAGGACATCAAGGCTCCCCTGGAGAAAGAGGAGTTCCTGGCCTGGCAACATGACCTGGAGGTCAACGAGAAGATGTCGGCCCAGGACCGGCCCACTGTGTTCCGCTGGACCGGCGCTGCCAAAGACGTCTTCATCTCCGGCTCCTTCAACAACTGGGTCTCCAAGATCCCACTGACCCGCAGTCAGAATAATTTTGTGGCCATAGTGGACCTGCCTGAGGGTGAGCACCAGTACAAATTCTATGTGGATGGCCAGTGGACCCACGACCCCTCCGAGCCCGTGGTGACCAGCCAGCTGGGCACAGTCAATAATGTGATCCAGGTCAAGCCGACCGACTTCGAGGTGTTCGACGCCCTGATGGTCGACTCCCAGAAGAGCTCTGATGTGTCAGACCTGTCCAGCTCGCCACCGGGGCCCTACCGCCAGGAGGCCTATGTGTCCAAGACAGAGGAGCGCTTCAAAACCCCCCCcatcctgcccccccacctgctGCAAGTCATCCTCAACAAGGACACCGGCATCTCTgatGGAGTGATGGTGCTCAGTGCCACTCACCGCTACAAGAAGAAGTATGTGACCACACTGCTGTACAAACCAATATGACCCCAGCACGACCTCTCCACGACCCTGTCACGACCCTCCAGAAGAGAGAGGCAGTGTGGAAGGTGcaaccagattttttttttttttttttactgccagCAAGGAATCTTTTTGGTTCTGAACAAAacgacaaaacaaaacaacgaaACACCTGCCAACTCCGTCCGTTTCTGTGGGCATTCCATGTCGGGTGAGGTGATGAGATGGGCGGAGACTGACAGTGACCCCCACACCCCACCTCCCCCTGACCCCTGGTGCACCCACCCCttttattgtgtaattgtatCAACTGTTAATTCTGCAATTAACGAGCGCCGTCACAATCTGAGCAGGGCAGAGGGTGGGGGCAGGTGTGGAAGGGCTGGGGTCAGGACAGGTGTGCTGGTGTTTTGCGCTCTGTGTGCCAGTAGTGCTGAGTTGCGGGTTATTGCACTGTGCAGCGCTCCCTAATCCCACAGGCACAGGTTTCTGGGACAACTACTGAGTTACACTCtctattgatttcatttttgtgtgaaaCGTGACTTTTTTCAGTGGACCCTCTTCATGTAGACAGGGGGCCAGGCACCAAGACAAACCTCTTATAATTTAGTCTCAATATCATTAAGGATTTTCTCATGGATTAAAGTACaaatacgtatatatatataaattttttACTCACACTAATCGAAAGTATTAAATCTTAGtggtgcattttttttaaattgcattactatgtttcatatttaatatcgCAGATCTGGCAATAGATTTAAAGCCTTTTCTAGTTAAAATATAGATCCTATTTGGgcattaaatactgtacatatgaCACATTCACATCACCAATCTCTGTTGAACAGAATTAGTAATGAATTTAGTTATACAAAACCAATAGGCAGTTTCTAATTGAATATAAATGGAAATGCTTGAATtgttgtcttaaaaaaaaaaaaaaaaaagatattaaatGTGCAACCAAACATCTTCTGTTGTGATTACCTGTGTGCGTATAATGTGTTGAGACAGTCCTAATGTGTCCAGTGTGCAATTGCTGCTGGACATGAAGTGGTTACACACTGATAGGTTCTAAATCAAAGACACCAGTGATTACATGTGCCCAGCGCGATTGTGTGTAACTGCATCCAAAtataattccatttataaattatcaataaatagCTTTTTGGAAGCTCCCAAAACCATATTTTGTTGTACTTgtttaaaaaggtttattgatcatttataaattgaattattaatggttcatAACTCTCATGTACTatctacaaatcatttattattgacactgtaatataaagtgttactgataATTCCCACTTGATGTAGTGTTATAAAGTTCTGCAAAATGAGTACCAGCACATCTCGGGTCGCCATGGCGGCTGTGCGCTGCAGACCCCTGACCCAGTAGTGCTCAAGCCTGGTCCTGCAGAACAGCTGCCCCACTGCtttgtgttccaactgagctctcatttacttaattgaagtaatttgattacatctGAATCTTTAAATTTTGTACCAAATataaagttggttccttaataatttccttatacaattttatacttcacttaaaactgttaaaaataatgaacaggctccaatttaggaaattattcaTTCAATTGACTCAGTTATTCCCAGTGTTAGGCTACTAAAGATCGAGATGCCAGTGCGTTGTGGCCTGAGTGTGTTAAGATCATGTGTGcttgaaaacacaaagcacaaactgACTAAGCAACCGGTTGTATGTCTTTTACACACGTGTGCGTACATGCGTGTGGATGTGGTCTCCAGGTCTGACTGCCACTTTATATAGACAGAAAAGCAGGACGTGAGGGTTGGGAGCCCGGGACTTGTGCATCGACTAAGCCAGCCTGTGGTGCAAATGTCAGGCTGTTTGCGTGTCAGTGCAAATAAATTTACATGAGCTTAAGGAAATAATGCACTAAGATACCAtgcaataattcagtcatatatttaatatattttgtacatttaaaaaaatctacaagGAAAGCCCGTTGTCCTCTTTTTAGCAGTTAACGATATGTAACAATTTCTTTGAATGcacaatttaacaaaattactaaaaaaaaaaagattgaagacaaaacaaaaaagttcaaacaaatcaagaaaactaaaaatatggGTGTGAATAAAAAAAGGTAACAGTTCACATGCGTAATAGTGCCACTTTACAAGTGCATTGGgtcactgaaatgtttttttttttttttaattagattttttccccccaagtattttgtattaaaacatgttgCAGTATATTACTCCTAATCTCACAATGAAATAAAGCTTTTACAATAGtagcaaatataaaacaaatccaacCAAAATCGTAGTTACTGGAATTAATTTCTCACGcacaaaactgaagaaaatgttttgccgATATTACCATATTCCTTGCATGTCTGTGCATTggaaaaatcatcatcatatatatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146834 lncRNA upstream 95862 14533963 ~ 14534200 (+) True G117209
TU146814 lncRNA upstream 190971 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 217807 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 230523 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 384744 14244708 ~ 14245318 (+) True G117131
TU147042 lncRNA downstream 89264 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 127283 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 127283 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 127283 14774115 ~ 14775240 (+) False G117379
TU147077 lncRNA downstream 127283 14774115 ~ 14777110 (+) True G117379
AMCG00018585 mRNA upstream 15617 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018577 mRNA upstream 42034 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018581 mRNA upstream 72262 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018582 mRNA upstream 75992 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018583 mRNA upstream 82582 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018588 mRNA downstream 60739 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018593 mRNA downstream 175159 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018600 mRNA downstream 184668 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018608 mRNA downstream 280330 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018603 mRNA downstream 302804 14949636 ~ 14954263 (+) True AMCG00018603
TU146792 other upstream 282321 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 388025 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 438985 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 484484 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 580909 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 128957 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 139791 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 307732 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2421380 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3334378 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile