RNA id: AMCG00018588


Basic Information

Item Value
RNA id AMCG00018588
length 3152
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00018588
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14707571 ~ 14731664 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGCTTTCTGCCTGGATCTGCTCTCCTCCACTGCCGCTATTTCAGCACCTTCCGAGCTGGACAGCGACTGCACTGAACACCCCCAGGAGCACGGCCTGAAACCGGCGGACTCGGGGGGCTTCAGGCACGACTTGGCCGGCCGCTCGCTGTTGTACCCCGGGCCCGGAGGCTTGGGtctggctctggaggaagagcTGGACATGCTGGCGGGGGAGCGAGAGCATGGCGCCGACCTGGCCGGCATGGAGGCGCCTCTGCACGGGCAGGACCCGGACTTGCTGTCACTGATCCGGCAGAAGGAGAAGGATCTGGTGCTGGCGGCTCGGCTTGGCAAAGCGTTGCTCGAACGGAACCAGGACTTGAGCAAGCAATATGAGAACATGCACAGGGATCTCAGCGAGAAACTGGAGCACCTGGAGCAGGAGAAACACGAGCTGCGGCGGCGCCTGGAGAGCCGTGAGGGGGAGTGGGAGGGGCGCGTGGCAGAGCTGGAGTCCGATGTGCGGCAGCTACAGGGGGAGCTGGAGCGGCAGCAGGCCCAGCTACGCGACGCcgatcgagagaagagccgagCAGTGCGGGAGCTGTCCGAGCAGAACCAGCGCCTCCTGGAGCAGCTCAGTCGGGCTGCAGAGGTGGAGAGGCAGTTGTCCATCCAGGTGTACTCTCTCAGGGATGAGTTTCGGGAGAAGAGTGTATCCACCAATCAGCACATGTCACGGCTAGAGAGCCTGCAGGCCGAGCTCGCCTGGTACGGGCAGACGCCGACTGGAGACAGCGGGCCGCCCCTCCTCTCTCCCGCTATCAAGATGCTGTCCGAGAGAAAGAGGCAGCTGGAGCGCCGCGCCTGCGCCGTGGCGGAGGAGAACGAGCTGCTGCAGGGCGCCGCGGACGAGCTGCGGGAGCGCGCGCGGCTGCTCGAGCGCCGGTGTCACGACAAGGACGTGCAGCTGCGGCAGAGTCAGCTGGAGCTGCAGGAGGTACGCGTGTCTCACCGGCAGCTGAGCGCGCGGATAGAGGAGCTGCACGAAGAGCGCAGCCTGCACGGGTTGGGCGCAGACCACGTGTCCCTGCTGTCTGAGATCGAGCAGAGCATGgagcaggaggagctggagcaggagagagagcagACGTCCTCGGCGAAGGACATCCCCACAGGCAGCCTGCACACCGCGCTGCACGAGCTGCGCAGACTCACGCAGAACCTGCTGGACGGCAACGAGTCTACGggctCTCGGCGCAGTGACGAGGAGGCCCTGGAAGAGCAGGTGCGGAAACTGAGTGAAGAGATGAGGGAGCAGAGAGAGCTGCTGGAGGCTGAGCAGAGCAGGATTCATGCAAGCCAAGAGGAGGCACTGCAGCTGCACAACCAGGTGACACTGCTGTCAGTGGAGATGGCCGCAGTGAAGGAGGACAGGGAGCGGCTGAAGGCCATGTCAGAGGTGCAGGAGCCCAGCGAGCAGCTGCAGAACGCCATTCGAGACAGAGACGATGCCATCGCCAAGAAGAATGCAGTGGAGATGGAGCTGGCCAAGTGCAAAATTGACATCATGTCTCTGAACAGCCAGCTGCTGGACGCCATCCAACAGAAACTGAACCTCTCGCAGCAACTCGAGGCgtggcagGATGACATGCACAGAGTGATCGATCAGCAGCTGATGGACAAACACCAGGAGGAATGTCGCGAGCCACCATACTCGTTCTCGGGGGGGGCGGCACGACGCAGCCGCCCCTCCCGCCCGTCTGGCGGCCGGCATGACCGCCATGCGGACGACAAGAGCCTCTTCTCCTTCTTCAAAAAGAACTGAGCATCTCTCATCCCTCCGTCCTGGGAGACGATGGGATGGGACACAGCAGGGGCACACAGGCAGGACACACGCAAAGATGACCCGACACATTGTGGACACACAGACGTACACAgatggacacagacacagagacagacagacggacacagaGACTTAGATGGACACAGAcaagtacagacacacagagtcacacacacaagacagacacagagtcacacacacaatagagacacaGAAAAAGGTAGACAGcacagaaatgtgtaaaatggaaattaacTCACCATTAGGGTACACGATTAGAGATAGATTTGAGTTTCggtttacaaaaaaatgaaaatgtagatGTGGCAAATTTTGTACCagagcaagaaaaaaacaaagcatgagAGATTTGCTTTGGTTGAAATCAAAGCTTTGGCTGTTGAGCCCCAGCGCTCCTCCGTCTCTGATCTCGCTAAGAAACCAGTCAAATACCATAGTGTCCAGCCCCACCCGTGACAGGGCCTGTTCTGGGACACTGCCTGTCTGGCTTCCGTGGGCGCTGGCAGCCGGCCGATGGGGATTTCCTCGGTGGGGAAACGGTGTTGTGCAGCTGTGCAGGTGGGAGCTGGTTACGTCTGGTCTGTGTCCTGCCCTGCAGTGCACTCTGGGTACTGTACTTGACTGGCTCTGCTGCGGAGCACAGGGGGACTCAAGTGTCAGCTGCTTGACCAAGGAAACTCGGGTgctgtttattaaaattattccGCAACGCACATcgacacttttttaaatgtttgaacaCCAAATTACAGGAGATATTCTGTATACCAGTGTGATCAAGTCAGTCACGAGTCGGGGGTCAGATTTTTCTACccagttttttcctttaattgctTTATGATGGAAGTTAAATCTAAGCAGTGTTCTAATTGCACAAGTTTATTTAtcaatttcagttattttgaaagcaaCAAGGAGGGGACAGGCGGGTCAGCTCCATGTGGCAATATGAGGACAGATCAGCCCGGCGTCCTGTCAGTTCTTGCTGGTGATGTGAATCagtttaagaaaagaaaagcagttgtATGGTGGGACCCAGTCTGTCTGACTCCTGAAGCGACAGAACGAGCTATTCTGCTGCTGAAGGGttttaataaacagaacaaaaacacctGAGCTTTGCTGGGGTGAGCTGCGGCCTGGGCATCTCTCAAACACAGGGCAGGAGAAGACCGGGGAGGACCTGATCTGTTCCAGGGCAGGCCTTCCACACAAGCCCCTAAATTGATTTAACTGAATTACATTATCAATTAAGAATTTTACGAACTGGTGGTGTGGAGTCCCTGCAGTGGGAAGGG

Function

GO: NA

KEGG:

id description
K16756 BICDL, CCDC64; BICD family-like cargo adapter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146834 lncRNA upstream 173371 14533963 ~ 14534200 (+) True G117209
TU146814 lncRNA upstream 268480 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 295316 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 308032 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 462253 14244708 ~ 14245318 (+) True G117131
TU147042 lncRNA downstream 4432 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 42451 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 42451 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 42451 14774115 ~ 14775240 (+) False G117379
TU147077 lncRNA downstream 42451 14774115 ~ 14777110 (+) True G117379
AMCG00018586 mRNA upstream 60739 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018585 mRNA upstream 93126 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018577 mRNA upstream 119543 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018581 mRNA upstream 149771 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018582 mRNA upstream 153501 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018593 mRNA downstream 90327 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018600 mRNA downstream 99836 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018608 mRNA downstream 195498 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018603 mRNA downstream 217972 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018602 mRNA downstream 223010 14954674 ~ 14981705 (+) True AMCG00018602
TU146792 other upstream 359830 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 465534 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 516494 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 561993 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 658418 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 44125 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 54959 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 222900 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2336548 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3249546 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070714 False 771 mRNA 0.52 5 NC_007119.7 3701042 ~ 3716734 (-)