RNA id: AMCG00018593


Basic Information

Item Value
RNA id AMCG00018593
length 1508
RNA type mRNA
GC content 0.62
exon number 4
gene id AMCG00018593
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14821991 ~ 14824758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGTGTGTAACCAACGAGCTCACAGATCGTATAGATAGTGTCTTTGGGTAAATCACTGCTGGGACGCCGAGCGGCAGGTCACAGGTCTTGCACGGCACACACGCACATTTTCCGAACTGCAATTCCCGGCATGCAATTGACAGACGGGTTCAGCTTCCTATTTGGTCTGTCCCTGAGCTCTTCAGCACTGAGACCCAGACCCAGACACGACTGTTTCCAAGAACTAGGACGTACGTCATGCAGTACATGTGCAGCATAGCAAATTAATAAGATGAGGCTCCCACCTTGGCCGCGAGTGACAAGTGGGGGTATCTCCAGCCTCCACCCTTGCCTGGCCTCACCCCACCGTCTCTGCAGCTCCTCTTCTGTGGCACCGCCCCCCCCGCTGAACTTTGTCCCGGCCAGTGGCCCCCCCGCCTCGGCCGCACTGGAGAGCCTGCAGGCCTTCGTGGGCCAGTCCCGTCAACTCCTGGTCCTCACTGGCGCCGGGCTGTCCACCGAATCAGGGATCCCGGACTACCGCTCAGAGACGGTGGGCCTGTACGCACGCACCGACCGCCGGCCTGTCCAGCACGCCGATTTCCTGCGCAGTCAGGCGGCCCGGCAGCGGTACTGGGCCCGGAACTTCACAGGCTGGCCCCAGTTCTCAGTGCACCGGCCCAATGCGGCCCACCTGGCGCTGAGCAGCTGGGAACGGCAGGGGCGGCTGCACTGGCTGGTGACTCAGAACGTGGACGCGCTGCACTCCCGGGCCGGGCAGCGGAGGCTCACGGAGCTGCACGGCTGCGCACACAGGGTGGTATGTCTGGGCTGCGGACTGCTCTCCCCGCGAGAGGCCCTGCAGACCCGGATGGCGGCGTTGAACCCGGGCTGGGCGGCAGAGGCGGGAGTGGTGGCGCCAGATGGGGACGTGCTCCTGCGGGACGAGGAGGTGCGCAGCTTCTGTGTGCCGGGCTGCGAGGCCTGCGGCGGCATGCTCAAGCCCCACGTAACGTTTTTCGGTGACACCGTGGACCGCAACACTGTGGAGCTGGTCCACCAGAGGCTGGCCGAGTCTGATGCCATCCTGGTGGCTGGGTCCTCGCTGCAGGTGTACTCTGGCTACAGGTTCCTGCTTGCAGCCAGTGAAGCCAAAATCCCCATCGCCATCCTCAACATCGGCCCCACCAGGGCAGACCACCTGGCCGCCGTGAGGGTCAGCGGCCGCTGCGGGGAGGTGCTGCCTACTCTCCTGCCCCTTTGACCCGAGCACAGACACAGCCGCCCACCTGCAATCCCCCTGACAGACAGCAGCGCAGAAAGGACAGACAGTTGCACTTTGGAGAGCAGTTCAGTGACTTTGCCCCATCTCACTGAGTGTCACCCAGGCCCCTCCTATTTGAGACGGTTTTAACACTAATACACTTGTATATTtgcaataaaatagtttttatttttgtaccgAGTGGTGAGCATTTCTCTCTATCGCTTCCTAAACCAGCAGCGTCACATTTTGCAGTGACTTCAC

Function

GO: NA

KEGG:

id description
K11414 SIRT4, SIR2L4; NAD+-dependent protein deacetylase sirtuin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147090 lncRNA upstream 24841 14796531 ~ 14797150 (+) True G117389
TU147089 lncRNA upstream 27752 14793885 ~ 14794239 (+) True G117388
TU147088 lncRNA upstream 28187 14792796 ~ 14793804 (+) True G117387
TU147083 lncRNA upstream 35504 14786025 ~ 14786487 (+) True G117382
TU147082 lncRNA upstream 37658 14783506 ~ 14784333 (+) True G117381
TU147080 lncRNA downstream 30321 14855079 ~ 14899918 (+) True G117380
TU147252 lncRNA downstream 667488 15492246 ~ 15529312 (+) True G117521
TU147253 lncRNA downstream 700956 15525714 ~ 15529341 (+) False G117521
TU147297 lncRNA downstream 802581 15627339 ~ 15627719 (+) True G117557
TU147318 lncRNA downstream 868455 15693213 ~ 15695253 (+) True G117574
AMCG00018588 mRNA upstream 90327 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018586 mRNA upstream 175159 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018585 mRNA upstream 207546 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018577 mRNA upstream 233963 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018581 mRNA upstream 264191 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018600 mRNA downstream 6742 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018608 mRNA downstream 102404 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018603 mRNA downstream 124878 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018602 mRNA downstream 129916 14954674 ~ 14981705 (+) True AMCG00018602
AMCG00018611 mRNA downstream 605526 15430284 ~ 15468382 (+) True AMCG00018611
TU147084 other upstream 33858 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 45497 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 474250 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 579954 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 630914 14189003 ~ 14191077 (+) True AMCG00018553
TU147178 other downstream 129806 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2243454 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3156452 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 3156452 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 3894448 18719206 ~ 18721343 (+) True AMCG00018702

Expression Profile