RNA id: AMCG00018600


Basic Information

Item Value
RNA id AMCG00018600
length 2565
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00018600
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14831500 ~ 14834064 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGCCGGAGTAGGGGGGCGCACGCAGGGCTGTCCTCTGAAGCCTGACCTGACCTCCCGCAGCTCGGACTCCTCCGCCTTCTCCCAGCGGGCCAAACTGGGGGGGCCGGCAAGGGGCAGTGGGGGTGGTGCTGTGGCGTCTGCGGGGGCAGCCTTGGGTTCGAGTGGTGCGTTCCCATGCGAAGACTGTGGGCGGGCATTCCCAGTGCTGGCGCAGCTCCTGGGCCACCAGCAGAGGGCGCACGGCCTGAGCAAGCCCCACCGCTGCTGCACGTGTGGCCGCCGCTTCGCCCTGCTCTCCAGCCTGCAGGTGCACCAGAGGGTCCACTGGGGTGCTCTGGACTGCCAGATCTGCGGGGAGAGCTTCCCCAGCGCCCCCAGCCTGGCCGCCCACCTGCTGCTGCTCCACGCCAACCCCGAGGACCCCCAGAATCTGCCTGCGGAGAGCCGGCGAGCAGGGAGAGCCAGGCTGGCCCAGGGAGTGCGGCCCCGGCTCCAGCCCCCACGGAGGGAGAGGCGCTACAGGCCGGGGGGGGAGCGGCTGTCTGGGCCCCAGTGGCGGCACACGGACGAGGGGCCCTATGCCTGCGCACGCTGTGGCCAGGCTTTCTCAGAgaaggctgtgctgctgtggcACCAGCAGGCCGGGTGCGGAGCAGGGGGGCGGCGGCAGAGGAAGAGGACAGTGAATCCCGAATCGGAGGCGGTGACCGAGACGGTCGCCCCGACAATGTCAACACCGCAGGCCACTCCCTCCCCTATTGCCCTGCCCCCGCCGCCACCCGACTCTTCCCCACTCCACGGCAGTGCCTCGGTGTCTCCTTCCGCTGCTGCTGTCGCATTCCTTCCCCCTCCTCTCACACCcgctccttctctttctcctcctgCAGCTCCCACACCCCACCAAGCCCCAGCCACCGGCTTCCATCAGTGCAGCTGCTGCCCCAAGCAGTTCAAGACCAGCTCTGGCCTGTCTTCCCACCTGCGCCAGTCTCACGCCCCGGTACCCAAGAAGGAAAAGGAGAGGAAGACGTCAGGGTATTGGCTGTTGCAAGAGGTGGGAGAGAGGGGTACTTACCCCTGCCGGTCCTGCCCCCAGGTTTTCTATACCCCCTCCAGCCTCTCACGACACAAGTGCAGGGAGCTGGGCAGTAAGAGGGCTGCTAGCAAGAAGGAGAGGGTGTTGTCCAAAGTGCAGCCACAGAGGGAGGGTCTGTACAGTTGCCAACATTGCCAAGGGGCCTTTGCGTCGTCCCGTGGGCTCAGGGAGCACGTGACACTGAGACATGGCGTGGTccggagtgagggagagggaaagagggaggatGGGAAAGCAAGCAAGACCTGTGCCCAGTGCCCCAAGGGGTTTAGAAACCCCTTAAGCATCTTCCAGCACAGGACGAGGGAGTGCCGGCAACAGTTGGGGCTCTGCAAGGAAGAGGTGTTGGAGACGAAaaaagaggagaaggaggtgcAGGAGCAGAGGACCGCGAAGCCTGAGAGGACCACAAAGACCTGTGCAACAACAAAACGCTTCCCCTGCCGCTCTTGTGACCAGGTGTTCCAGCACGCGTCCGCTCTGTACCAGCACCGTGAGCAGCACCAGCGGAAAAGGGGGAAAAGTGTGTCCAGCAGGGCCGAGAAGAGGGTGAAGGAGGGGAAGaggagaaaggaggaggaggtggaggtggcTGTTGCCAAGAAGAGAAAGTCATTCCCTTGCTTTTACTGCAGCAAGACGTTCCTGCACCCTGCCTCGCGCTACACCCACAGCCGTGTGCATCACCCCCAGCAGCAGGAACGTGCCAAGCAGTGCTGGGAGGCCCGAACCTGCCTGACCTGCAGGACCCCCTTCAGCAACCGCTCCCTGCTGTTGCAGCACTGCACTATAGGAGGTTGCAAACCGAGGGTGCAGCTGCCTGGAGTGGAGGACCAGCTCTTTGCCTGCGACCTCTGTCCCAAGGCCTACCGCCACCTCCCCAACCTGTATATGCACAGGAAGATCCACCTGAACCCACCAAAGAAGAGTGGGATtagaaggggggagggggaagaggTGAAGGGAAAGAAAGGGGAGGAGGAGACCTTGAACGAAGAGAAATGGGGGAGTGAAGAAACCAAggcagaggaggagaaagaggagaaggaggagattCACCTCTTGCTATCGCAGAGGAGCTCAGAACAGTCTCCCGCCCTGGCACAAGAGCCCCACAGGTTAGGGAAGGGCAGTGGGGGCAGGGGAGGGCTGTTGCTATGCAGCGTGTGCTcgctgggggtgggggtctcCCGAGGGATGCCACGGCGACCACGACTGcagcgggaggaggaggaggagaagaaacgGCGAGAGGAGCGGGGTTTTGGGGCAGGCTGTGTGGACAGGAGGCGGCTGTTTCACTGCCTAGTCTGCAGACGCACTTTCTGCATGCTGGGCGTCTTCCTGAAGCACTGTGAGAAGCACCTGAGCCAGCGGAGAGGGCATCAGGTTAACAGCGGCAGTGAGACGGAGAGCTGTGACAGCATGGACGATGTATACAAGGACTTGGATGAGGACATTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147090 lncRNA upstream 34350 14796531 ~ 14797150 (+) True G117389
TU147089 lncRNA upstream 37261 14793885 ~ 14794239 (+) True G117388
TU147088 lncRNA upstream 37696 14792796 ~ 14793804 (+) True G117387
TU147083 lncRNA upstream 45013 14786025 ~ 14786487 (+) True G117382
TU147082 lncRNA upstream 47167 14783506 ~ 14784333 (+) True G117381
TU147080 lncRNA downstream 21015 14855079 ~ 14899918 (+) True G117380
TU147252 lncRNA downstream 658182 15492246 ~ 15529312 (+) True G117521
TU147253 lncRNA downstream 691650 15525714 ~ 15529341 (+) False G117521
TU147297 lncRNA downstream 793275 15627339 ~ 15627719 (+) True G117557
TU147318 lncRNA downstream 859149 15693213 ~ 15695253 (+) True G117574
AMCG00018593 mRNA upstream 6742 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018588 mRNA upstream 99836 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018586 mRNA upstream 184668 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018585 mRNA upstream 217055 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018577 mRNA upstream 243472 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018608 mRNA downstream 93098 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018603 mRNA downstream 115572 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018602 mRNA downstream 120610 14954674 ~ 14981705 (+) True AMCG00018602
AMCG00018611 mRNA downstream 596220 15430284 ~ 15468382 (+) True AMCG00018611
AMCG00018619 mRNA downstream 749529 15583593 ~ 15585087 (+) True AMCG00018619
TU147084 other upstream 43367 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 55006 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 483759 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 589463 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 640423 14189003 ~ 14191077 (+) True AMCG00018553
TU147178 other downstream 120500 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2234148 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3147146 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 3147146 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 3885142 18719206 ~ 18721343 (+) True AMCG00018702

Expression Profile