RNA id: AMCG00018602


Basic Information

Item Value
RNA id AMCG00018602
length 6200
RNA type mRNA
GC content 0.53
exon number 30
gene id AMCG00018602
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14954564 ~ 14981705 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAGCTGGACTGTTGCAATGGCAGGCATGGAGTCGATGTGGAGGCCTCCCCGGTCTTGCAATGACTACTGGAGCGAGTACAAGCACTGCAAGAGCCTGATGAACCGCTTTCACCACTACTACACCTTTGGAAAGTCACCCTCCTGCAAGCAGTGGAAGACAGACTACTACACCTGCGTAGACTGGGAGCGACACCAGGACACAGCAGCCAAGGATGCCCTGCGCCAGAGCGAGAGAGCCAGGCTGGCACAGCAGAGGCAGCACGATCCAGTCTGGAAGCTGAGGAAGACGCCCCCTTCGGACTGGCACTTACCCCTCCACCACGGCAGCCCCAAGGACAGCTGACCCGCCCACCTAAGAGCACTCGTGCTGCGTGCCGGGCCGATCCATTTCATAAATTGTTTTACAAGCTGCAGGCTTGGAAACGAACTGTACTGATTGAGGCGTATAATAAAATGCTGTGTTATTCTTCTAATTCCACATGTGTCCAACAGTCACAAGCCTGGCATTGTAACATTTTCCACTCCTGTAGAGTCTACTTCTAAATCAACAACTTATACATAAGctgttaatttttatttcccaTTGTCAAAGCAGCTTCCCAGTATAGGGAATTACACAtcgtatttgttttcatgtccACTATTGCTGCATTTCCGGATCACTTACCTGAGAAAGggtatacaattttttttaataaaataagtttagTCATTTCCATTACCTGATTCTACCTTGTCAATGTCTCCCCCATTATAAAATGCTGGGTGTGgtttttacatttgtgaaaagcaaaataaaaatgaaaacatttgtgttgtgAGACACcccatttccttttaattacatattggggaaaaaaaaaaaaagtgtgatgaATAAAAGTAGTGCAAGTGGTCACTGCTGGCAAGTTTAACTAGGGAGTTTCCTTCCGCTCGAAGCCAGAATGAGGAGAGTCAATGAGATAATTCCTCTTGATAATTGCACCAAGCCATTGCAAACCACACCAAttgctgtattgtatttattcataatttattacGTATCAAATCCCAATCTGATTACTTAACAGGTTGTAGACGAGGGATATGCTTGCTGGCGTGCATCCTGTCCACTACAGTTCAGGTCAGCTGTATCCTGCGGTTATCAATAATCAAACCAATGAGTCAATGGTGGGCTGTTCAGGACCTTCATTACCTAATTGAGCCAATTAATTTGGATGTCATTTCAGATCCTCTGCTGTTTGCAAGGCTTAAACCCATCTCAGAGATAGAGACTGGTGTCCAAGACAGGAGTTTTGTATTCCTGTTGTAGAGGGAAAAGCAGGGTCTTTCCATCATTTTTTTAGGTAAATTGAGCtcataattagttaattgaactaattatccACTTAACTGTACTAAACCAATTGAAAGTACAACCCCATGCTGGGCTCTTTTTACAGGCGATCAATGGGGGACTGCAGCCCGAGACAGGATGTTGTCCTACTGTGTGTAGACCTTGGTGATGTCATTGTATTTGCCATCAGGGGAGCGGTAGTTGTCTATGGGTGGGCTGTAGCTGGGCCCCTGGTGGTTAAAGGGGAAGAGTCTTGCATCTCGTTTGACTGCAGCCTGATACAGCTCCTCAGACTCCTGCCGTAGCTGCTGGAGTGCCTCCTTCTGGGCGTCCAGGGCAGCACTGATGGCTGCCATCTCTGTGCAGTTCTGAGTGTACTTGAACCGAGCCCACTCCTTCAGCAGCAGGGCTCTGCGCTCGCTCTCTTCCAGGGACAGCTGCGGTGGGgggggttaCCTGGTTTCATCGAGGAACTTGACGGGGGTGACAAAGTCTTCTATGGGGATGAACTCAGGCGGGATCTTCTCCAGCTTTTTCACCTTCTTCTTCAGGCGATCCCTCAGTGCCTGCTCCCTCTTCGGGTCAACCTTCTTCTTTTTCCTGGGCTCggctCTCACAGGGAGAGACTTTTTCAGGGCCAACACAGAGGGAAACCAGTGACTTTGTCTGCTCTGGCAGCTCCGTCCCGCAAGGGAGCTTATAACTTCAGACTGTCCATATCCGCATTTCTCTGCTGGAGGATGCATCACACCCATTGTACCAATGCTATCGCTCGTGGTTATTTGGCGCAGATATCCTAAGCCTGACCTCTCTCAGGGCATGTGTTTCCAGGGGAACTTTAGGAAAGGTCGGATACTTcctgtgttgctgctgctgcggctgcTGCAGGGAGCGAGAGATGCGAGCGACGGGAATGGAGTTGCACTGAAAGCACCAAGTGACTGACGGGCTTTAGCGAAAACGTGtcgggaagagagagggagcgagagggTGGACAGTGCCCGGGGAAAAGCCACGAAGCGACGGGCAGAGCAAAGGGCGAGGAAGAGAAGAGGGGGGAAACATTGTAGCCGGCTCCAGGACTTTCCCTGATTGTTGGGCTGCGCTGGAAATGAAGCTTTTGAAGCCCACTTGGGTCAGTCACAATGGAAAACCAATATTTTCTGTTGACATCCATCCAGAGGGCACGAAGTTTGCAACCGGAGGGCAAGGGGAGGATTCTGGGAAGGTTGTCATATGGAACATGGCGCCTGTTCTGCGAGAGGAGGATGAGAAAAATGAGAACATTCCCAAGATGCTTTGCCAGATGGACAACCACTTAGCCTGTGTGAACTGTGTGCGCTGGTCCAACAATGGCCTGTACCTGGCGTCTGGAGGGGATGACAAACTGGTCATGGTGTGGAAGAGAGCAGCGTACATCGGCCCCAGTACTGTCTTTGGGTCAAGCAGTAAGCTGGCCAACGTGGAGCAGTGGAGGTGTGTAACCATACTGCGAAACCACACGGGAGATATGGTGACCACACTGAAGGGCCACACTGGGCTGGTGAAGGGGCTGACCTGGGACCCGGTGGGGAAGTACATCGCTTCCCAGGCCGACGACCGCAGCCTGAAGGTGTGGAGGACCATGGACTGGCAGCTAGAGACCAGCATCACCAAGCCTTTCAACGAGTGTGGCGGGACTACCCACGTGCTGCGGCTCAGCTGGTCACCGGACGGTCAGTACCTGGTGTCTGCCCATGCCATGAACAACTCGGGCCCCACCGCCCAGATCATTGAGCGAGCCGGCTGGAAGACTAACATGGACTTCGTCGGCCACAGGAAAGCCGTGACCGTGGTGAAATTTAATCccaaaatctttaaaaagaagcagaagaatGGCAGCTCTCCCAAGCCCAGCTGCCCTTATTGCTGCTGTGCCGTCGGGAGCAAAGACCGATCCGTGTCTGTCTGGCTCACCTGTTTGAAACGCCCCCTGGTGGTCATCCATGACTTGTTTGACAAGTCCATCATGGACATAACTTGGACACTGAATGGGCTGGGTATCCTGGTGTGCTCCATGGACGGCACGGTGGCGTTCCTGGACTTCTCTCAGGACGAGCTAGGGGACCCGCTCAGCGAGGAGGAGAAGAACATCTATGGCAAGAGCCTGGCCATCATCACAGAGGCCCAGctgtccaccaccatcatcGAGGACCCCGAGATGCTCAAGTACCAGCAGGAGAAACAGCTGTCGGAGCACCGGGACGCCGCCAACAGGGATTCCTCCGCCGCCGCCACGCCAAAGCTGACCAGCGTGGTGAACGGAGAGTCCCTGGAGGACATCAGGAAAAACCTATTGAAGAAGCAGGTGGAGACCAGGACGGCGGACGGAAGGAGAAGGATCACACCTCTCTGCATTGCTCAGCTGGACACGGGGGATTTCTCACCAGCGCTCTTCAACAGCGTCCCGATCCTGCCCGGATCGTCGATGTCGTCCCAGCTCACCCCGCAGCTCACCTCCTCCGACTCCAACACCAACTCGCTCGGCCTCAAGGCCTCTCAGGacgccccccccgccccctcaaGCAAACCCCCTGACGAACTGCAGCACAAAGACGGCCTCAATGCTGTGGCTCCGGGTTCCTCCACGGCCATCAACTCCAGCGCCCTGAAACCCAACTCGCTGCTGAGCTCTGCAGCCAAGATCGAACCAATGAAAGCCCTAGATTCGCGTTTCACCGAGAGGTCAAAGGCCACGTCAGGGGTTGTCATCTCCTCTACTGCTGTGACACTCACCCCAATAGAACGaGCGAAGGACCCAAGCGCTTTAAAGGAGTCCAAGTCGAAAGACGAGACCAGCAGCGACAGCGAAGACAAGATTGCAGCCGTCAAGTGCCTCTCCAAGAGGAAGGGCGAGGTGGAGGGGCCGGAGGTGGTGGAGAAGAGGAAAAAGGGACGGCCCAGGAAAGACTCCAAACTCTTGACAGCTGCTCCCTCGGCAGAGAAGGAGCCCTGTAGGGTTGTAGCTCCAGTCGTGGTGCTGAAgctccccacccccacacctCAGAAAGCTTTTACACTACAGATAAGCTCGGAGCCCTCCATATACATCGAGGTGGAGAACGAGGTGTCGGCACTGGGGGGGGCGAAGCTGAGCCGGCTCAGGTGTAACCGGGAGGGCAGGGAGTGGGAGACGCTGCTGCCCAGCCGGATCCTGACTGCGGCCGGCAGCTGTGACATCATCGGCGTGGCATGCGAGGACAGGATGCTCTCGGTGTTCTCGGCATGTGGGCGGCGGTTGCTCCCAGCGATCCTGCTGCCGGCACCCATGTCCACACTGCACTGCGCTGGTTACTTCGTCATGGCACTTACCGCCTGCGCCACGCTGTCAGTCTGGGATGTCCAGAAGCAGTGTGTGCTGGTGAAGAACGAATCTTTACAAGTTATCTTATCAGGGACGGATACCACGGTTTCTCAGTCCTTACTCACGCAGCAGGGAGTCCCGGTCATCAGCCTGTCCAATGGGAAGTGCTATTGCTTCAACTCCTCTCTGGAGACATGGAACCTGATCGCAGACAAGCAGGACTCCCTGGTGCAGTGTGCCGACTACAGGGCCTGCCTGCCCTCCCAAGAGGCCATGCTGTCCAGTGGGCCCTTGGCTGTCATACAGGGCCGCACTTTAAACAGTGCGGGCCGGCTGGCGTCCAGGCTCTCCTCCACACCTCACCAACTCCAGCAGGGAATGACTTTGGCCTATCTGGAGAACCAGATGGCTTCGGCACTTATCCTCAAGTCCAGCCAGGAGTACAGGCACTGGCTGCTCATCTATGCACGCTTCCTGGTCAATGAAGGGTCGGAGTACCGGCTGCGAGAGCTGTGTAAAGACCTACTAGGACCAGTGCACAAATCAACTGGTAGCATATGGGAAGCCAGCGTTCTGGGGCTGCGGAAACGAGACCTACTGAGAGAGGTCCTGCCCGTGATCGGCCTGAATCTGCGCTTCCAAAGGCTCTTCACAGAATACCAGGACCAGCTGGAGCTGCTCAAGAACATATAGCACTTTCTCCTCCTCACCCCACCCACAAGGGGGAGCCAGTCATCAGTAGCGAGCCGCAGCCTGgccctccaccccccccaccccccgcttCCCGACCCTGGAGGGCGCCACACCTCAAGATGCCCCGCTTGGAGATGCCCGCTGGGAAGGGTGTCTTtgcagcagtgtgtctgtgggaaGGGGATGGGGGTGTAGTTGGATGGACCACGCAATTTTGTAGAAAAAGGGGAAGAAAGTgttaataattaacaataataatgaaaataatattaattattacaatGATAGTTATGGAGAAGGCTACGTCAGGCCCCACTGGGTTCCCGGGAGGCGGTCTGTACTGGCTGGGTGCCGTGCTGCTGTAAGCGCAGAGCCGCCGCCGAGTGACCAACGCCCGGAACATGGACAGAAACGTTTACAGTCATAAGACAATGATCTCTGACCTCTCTAAGCCCCCATCCCCTTCCACACCACCCTCTTTTAGTTTCTGGGCCAATAACTCAGTTTTTGTCTGTCAAGACATGGACTACTTTTCTACTCGACCTCAATTCACTGCCCGTACGGGGATAGGGTTCAGGGCCGCAGGGTTGAAACCAGTAACATAAACAAACGATGACAAAACGAAGAATAAggcaacaaataaaataaaaatgtgtgcagGATTACTATGGCAACACCgaatatttgaacatttttttgACGGTGTGAGGGTTTCTCAATTTGTACATGGACTGTAATGGTGCCCTCGCGCggtttgtaatttttaaatgtttgtacaagagacctttttttcttctgtttttgtttcattttctaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K11293 HIRA, HIR1; protein HIRA/HIR1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147080 lncRNA upstream 54756 14855079 ~ 14899918 (+) True G117380
TU147090 lncRNA upstream 157524 14796531 ~ 14797150 (+) True G117389
TU147089 lncRNA upstream 160435 14793885 ~ 14794239 (+) True G117388
TU147088 lncRNA upstream 160870 14792796 ~ 14793804 (+) True G117387
TU147083 lncRNA upstream 168187 14786025 ~ 14786487 (+) True G117382
TU147252 lncRNA downstream 510541 15492246 ~ 15529312 (+) True G117521
TU147253 lncRNA downstream 544009 15525714 ~ 15529341 (+) False G117521
TU147297 lncRNA downstream 645634 15627339 ~ 15627719 (+) True G117557
TU147318 lncRNA downstream 711508 15693213 ~ 15695253 (+) True G117574
TU147317 lncRNA downstream 713721 15695426 ~ 15698865 (+) True G117573
AMCG00018603 mRNA upstream 411 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018608 mRNA upstream 27150 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018600 mRNA upstream 120610 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018593 mRNA upstream 129916 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018588 mRNA upstream 223010 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018611 mRNA downstream 448579 15430284 ~ 15468382 (+) True AMCG00018611
AMCG00018619 mRNA downstream 601888 15583593 ~ 15585087 (+) True AMCG00018619
AMCG00018618 mRNA downstream 656269 15637974 ~ 15648175 (+) True AMCG00018618
AMCG00018620 mRNA downstream 687110 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018624 mRNA downstream 700750 15682455 ~ 15691741 (+) True AMCG00018624
TU147084 other upstream 166541 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 178180 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 606933 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 712637 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 763597 14189003 ~ 14191077 (+) True AMCG00018553
TU147595 other downstream 2086507 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 2999505 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 2999505 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 3737501 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 4466921 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058665 False 3811 mRNA 0.49 25 NC_007116.7 18047111 ~ 18072844 (+)