RNA id: AMCG00018604


Basic Information

Item Value
RNA id AMCG00018604
length 507
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00018604
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14957253 ~ 14957886 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGAGACACCTGCTGGTTAACcccatgctgtgtgtgtgcagagccGAGCCCAGGAAAAAGAAGAAGGTTGACCCGAAGAGGGAGCAGGCACTGAGGGATCGCCTGAAGAAGAAGGTGAAAAAGCTGGAGAAGATCCCGCCTGAGTTCATCCCCATAGAAGACTTTGTCACCCCCGTCAAGTTCCTCGATGAAACCAGGGTGCGCACCCCACCGCAGCTGTCCCTGGAAGAGAGCGAGCGCAGAGCCCTGCTGCTGAAGGAGTGGGCTCGGTTCAAGTACACTCAGAACTGCACAGAGATGGCAGCCATCAGTGCTGCCCTGGACGCCCAGAAGGAGGCACTCCAGCAGCTACGGCAGGAGTCTGAGGAGCTGTATCAGGCTGCAGTCAAACGAGATGCAAGACTCTTCCCCTTTAACCACCAGGGGCCCAGCTACAGCCCACCCATAGACAACTACCGCTCCCCTGATGGCAAATACAATGACATCACCAAGGTCTACACACAGTAG

Function

GO: NA

KEGG:

id description
K17421 MRPL40; large subunit ribosomal protein L40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147151 lncRNA downstream 99658 14856420 ~ 14857595 (-) True G117441
TU147148 lncRNA downstream 121528 14833856 ~ 14835725 (-) True G117438
TU147142 lncRNA downstream 172940 14780287 ~ 14784313 (-) True G117432
TU147023 lncRNA downstream 252795 14703640 ~ 14704458 (-) True G117338
TU146993 lncRNA downstream 320914 14635404 ~ 14636339 (-) True G117319
TU147187 lncRNA upstream 21155 14979041 ~ 14980384 (-) True G117472
TU147223 lncRNA upstream 256282 15214168 ~ 15214431 (-) True G117501
TU147287 lncRNA upstream 540776 15498662 ~ 15516282 (-) False AMCG00018617
TU147288 lncRNA upstream 540776 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA upstream 558668 15516554 ~ 15518181 (-) False AMCG00018617
AMCG00018605 mRNA downstream 8986 14939774 ~ 14948267 (-) True AMCG00018605
AMCG00018606 mRNA downstream 34246 14899812 ~ 14923007 (-) True AMCG00018606
AMCG00018607 mRNA downstream 71902 14880599 ~ 14885351 (-) True AMCG00018607
AMCG00018601 mRNA downstream 81849 14874751 ~ 14875404 (-) True AMCG00018601
AMCG00018597 mRNA downstream 85450 14859757 ~ 14871803 (-) True AMCG00018597
AMCG00018609 mRNA upstream 214076 15171962 ~ 15177670 (-) True AMCG00018609
AMCG00018610 mRNA upstream 279274 15237160 ~ 15292085 (-) True AMCG00018610
AMCG00018613 mRNA upstream 421857 15379743 ~ 15418462 (-) True AMCG00018613
AMCG00018612 mRNA upstream 464029 15421915 ~ 15428751 (-) True AMCG00018612
AMCG00018617 mRNA upstream 546565 15504451 ~ 15518315 (-) False AMCG00018617
TU147067 other downstream 218941 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 436378 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 1701484 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 3045917 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 3754365 11199578 ~ 11202888 (-) True G116428
TU147284 other upstream 540776 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 540776 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2051012 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 2268204 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 2268204 17226090 ~ 17256271 (-) False G117823

Expression Profile