RNA id: AMCG00018605


Basic Information

Item Value
RNA id AMCG00018605
length 2013
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00018605
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14939774 ~ 14948267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAATTTGGCGCcaggtttctttctttttaatcaggGGAAGTGTGTGTACTTTACGTTCTccattttacatacattttattcatttgtttttatttattttaaagcccaCTTTGCTCTATTATTGGACACCGGCAGAAGGGATTAAGATGTTTGTGTCTGATATTCGGAAGGAGTTTTATGACGTTGTGGTGAATCAGAGGCTGGCCCTCCTCGTCTCCTCCGACATCGATGCCTTGTGTGCCTGCAAAATCCTGCAAgCACTGTTTCACTGTGACCATGTTCAGTACACCCTGGTGCCAGTGAAAGGATGGCAGGACCTGGAAACCGCCTAcctggagcacaaggagcagTTCCGCTACTTCGTGCTGATCAACTGCGGGGCCAACGCAGACCTGCTGGAAACCCTGCAGCCAGAGGACGACACAGTTTTCTTCATCTGTGACTCCCACCGGCCGGTGGATGTGGTCAACGTCTACAACGACACACAGATCAAGCTCCTGATTAAACAGGATGACGACTTAGGCGTCCCCGCCTACGATGACATCTTCCGGGACGAGGACGAAGACGAAGAAGACTCGGGGAACGAGAGTGATACTGTGGAGAGGAGAATAGAGAAGCAGAGGAAGAGGCGAGAGTGGGAGGGAAGAAGGAGGGAAATCTTGTTTGACTACGAGCAGTACGAGTACCATGGCACTTCGTCTGCAACCGTGATGTTTGAGCTTGCCTGGGTCATGTCTAAGGACACCAAGGACATGTTGTGTATGAAATACGTGACGGATGTGGCGGCCCTGCAGAGACACGTATCCCGACACAACCATCGCAACGAAGACGAGGAGAACTCCCTGTCCATAGACTGCATGCGCATCTCCTTCGAATACGACCTGCGCCTGACCCTGTACCAGCACTGGTCCTTGTATGAGAGCATCTTCAACTCCTCTTACACATCCTCCAACTTCAAGCTGTGGTCTGTCCATGGGCAGAAGAAGCTGCAGGAtCTTCCcctgaaacaggtgaggcagaAATTCAACGCGATGGACATCTCCATCAAAGAGAACCTCCGAGAGGTCATAGAGGAATCCTCCAACAAATATGGCATGAAGGATATCCGGATCCAGACGTTTGGCGTTCACTTCGGCTTCAAGAACAAATTCCTGGCGAGCGATGTGGTGCACGCCGCCGCCGCCCTGCTGGAGAGCATGGAGAAGGATGAGAGCAACACTGACAACTTCATCCACGCATTGGACTGCCTCTCCAGGAGTAACCTGGAACAGCTGCACAAGGGCATCGAGCTGGCCAAGAAGAAGCTGATTGCGGTTCAGCAGACAGTGGCCAGCTGCATCTGCACCAACCTCATCATCTCACAGGGGCCCTTCCTCTACTGCTACCTCATGGAGGGCACCCCAGACGTCCAGCTGTTCTCCAAGCCCATGTCACTGACCCTCCTCTGCAAGTACCTGCTCAAGGCCTTCGTTCGCTCGACCAAGAACAAGCGCTGCAGGCTGCTGCCCCTGGTCATGGCTGCGCCCCTGGATGCAGAAAAGGGCACTGTGATCGTGGTGGGAATTCCTCCAGATTCTGAGACCTCGGACAAGAAGAACTTCTTCGGGCGGGCGTTTGAGAAGGCCGCTGAGAGCACCAGCTCCCGGACGCTGCACGACCACTTCGACACGGCCGtcatCGAGCTGAAGACTGAGGACAGAAGCAAGTTCCTGGATGCTCTCATCACCCTGCTGTCCTGAAGGCCTCTGGACAGTGGGACTGTTTTAACCAACTTGGGGCTGGTCTCTTATCTTTTTAATTCCTGTATGTGTGTAAattgtacaaattatttttttattgttgtctgTAATACTCCTTTGTTCACCCTGCCCACccctgtaaatattttaaagtgtagATGTATTGTAGCAAAGGTGTGAATAAATTGCTATTCTAATTAACCTTGgtctgagggggggggggatttatGATCATTTATCATCACATCTGAAATATTCTGGGAGTGTTTTCGG

Function

GO:

id name namespace
GO:0006270 DNA replication initiation biological_process

KEGG:

id description
K06628 CDC45; cell division control protein 45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147151 lncRNA downstream 82179 14856420 ~ 14857595 (-) True G117441
TU147148 lncRNA downstream 104049 14833856 ~ 14835725 (-) True G117438
TU147142 lncRNA downstream 155461 14780287 ~ 14784313 (-) True G117432
TU147023 lncRNA downstream 235316 14703640 ~ 14704458 (-) True G117338
TU146993 lncRNA downstream 303435 14635404 ~ 14636339 (-) True G117319
TU147187 lncRNA upstream 30774 14979041 ~ 14980384 (-) True G117472
TU147223 lncRNA upstream 265901 15214168 ~ 15214431 (-) True G117501
TU147287 lncRNA upstream 550395 15498662 ~ 15516282 (-) False AMCG00018617
TU147288 lncRNA upstream 550395 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA upstream 568287 15516554 ~ 15518181 (-) False AMCG00018617
AMCG00018606 mRNA downstream 16767 14899812 ~ 14923007 (-) True AMCG00018606
AMCG00018607 mRNA downstream 54423 14880599 ~ 14885351 (-) True AMCG00018607
AMCG00018601 mRNA downstream 64370 14874751 ~ 14875404 (-) True AMCG00018601
AMCG00018597 mRNA downstream 67971 14859757 ~ 14871803 (-) True AMCG00018597
AMCG00018599 mRNA downstream 89865 14838570 ~ 14849909 (-) True AMCG00018599
AMCG00018604 mRNA upstream 8986 14957253 ~ 14957886 (-) True AMCG00018604
AMCG00018609 mRNA upstream 223695 15171962 ~ 15177670 (-) True AMCG00018609
AMCG00018610 mRNA upstream 288893 15237160 ~ 15292085 (-) True AMCG00018610
AMCG00018613 mRNA upstream 431476 15379743 ~ 15418462 (-) True AMCG00018613
AMCG00018612 mRNA upstream 473648 15421915 ~ 15428751 (-) True AMCG00018612
TU147067 other downstream 201462 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 418899 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 1684005 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 3028438 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 3736886 11199578 ~ 11202888 (-) True G116428
TU147284 other upstream 550395 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 550395 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2060631 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 2277823 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 2277823 17226090 ~ 17256271 (-) False G117823

Expression Profile