RNA id: AMCG00018606


Basic Information

Item Value
RNA id AMCG00018606
length 1381
RNA type mRNA
GC content 0.57
exon number 13
gene id AMCG00018606
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14899812 ~ 14923007 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATGAGGGAGGTTCCGGATTCCCTGGATTGgcctgggagagggagagagagagagaagcacacaattaaagtttatatatttatcgaTAACGAGAGGTTTCACATAGCCCCCTCGATTGCTGTGGAGATGTCGCAGCCTGCAGAGAAAGGGAAGTTTCCAGAAGCCGCTGGCTATGTTGGGTTTGCCAATCTTCCCAACCAGGTCCACAGGAAGTCGGTGAAGAAAGGCTTCGAGTTCACTCTGATGGTGGTTGGGGAGTCTGGGCTGGGGAAGTCCACCCTGATCAACAGCTTGTTCCTGACCGACCTCTACCCTGAGCGTTACATTCCAGGGGCTGCAGaaAAGATTGAGCGGACGGTGCAGATCGAGGCGTCCACCGTGGAGATCGAGGAGAGGGGCGTGAAGCTGCGTCTGACGGTGGTCGACACGCCGGGCTACGGAGACGCCATCAACAGCCAGGACTGCTTCAAGACGATCATCCAGTACATCGACAGCCAGTTCGAACGCTACCTGCATGACGAGAGCGGGCTGAACAGGAGGCACATCGTGGACAACAGAGTCCACTGCTGCTTCTACTTCATCTCCCCCTTCGGACATGGtCTGAAGCCTTTAGACGTGGAGTTTATGAAGGCAATCCACAGCAAGGTGAACATCGTCCCGGTCATCGCCAAGGCTGACACCCTGACTCTAAAGGAACGCGACCGACTGAAGAGGAGGATCCTGGATGAGATTGCGGAGCATGGCATCCGCATTTACCAGCTCCCGGACGCCGACTCGGATGAGGACGAGGAGTTTAAAGAGCAGACGAGAGTCCTCAAGGCCAGTATCCCCTtcgctgtgattggctccaaTCAGTTGATCGAGGTGAAAGGGAAGAAGATCCGAGGCCGGCTGTACCCCTGGGGCGTGGTGGAGGTGGAGAACCCCGAGCACAACGACTTCCTCAAACTGCGCACCATGCTGGTgacTCACATGCAGGACCTGCAGGAAGTCACCCAGGACCTGCACTACGAGAACTTCCGCTCAGAGCGTCTGAAGAGAGCTGGCAGGGCGGTTGAAGATGAGGTCATGGACAAGGACCAGATCCTGCTGCAGAAGGAGGCTGAGGATGCAGGAGATGATTGCCCAGATGCAGGCGCAGATGCGAATGAAGCCAGGAGACGAGTGAGGGGTGTGGCCTGGGCTGCCCTGCCGGACTGCCTCTCCACAGCAATGCAGAGCAAACCCGACCTTCGTCCACCTCCTTCAGccgcccacccccccacccccctccatcGCTCTCAGCGTGTGACTGACAGTACTTCAGCTAGGCAGGCCAGGAACCCACCCCCTGATCCCCCCATCCACAACGCTACTCCCAGGCCCACTGATTCCTGG

Function

GO: NA

KEGG:

id description
K16942 SEPT2; septin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147151 lncRNA downstream 42217 14856420 ~ 14857595 (-) True G117441
TU147148 lncRNA downstream 64087 14833856 ~ 14835725 (-) True G117438
TU147142 lncRNA downstream 115499 14780287 ~ 14784313 (-) True G117432
TU147023 lncRNA downstream 195354 14703640 ~ 14704458 (-) True G117338
TU146993 lncRNA downstream 263473 14635404 ~ 14636339 (-) True G117319
TU147187 lncRNA upstream 56034 14979041 ~ 14980384 (-) True G117472
TU147223 lncRNA upstream 291161 15214168 ~ 15214431 (-) True G117501
TU147287 lncRNA upstream 575655 15498662 ~ 15516282 (-) False AMCG00018617
TU147288 lncRNA upstream 575655 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA upstream 593547 15516554 ~ 15518181 (-) False AMCG00018617
AMCG00018607 mRNA downstream 14461 14880599 ~ 14885351 (-) True AMCG00018607
AMCG00018601 mRNA downstream 24408 14874751 ~ 14875404 (-) True AMCG00018601
AMCG00018597 mRNA downstream 28009 14859757 ~ 14871803 (-) True AMCG00018597
AMCG00018599 mRNA downstream 49903 14838570 ~ 14849909 (-) True AMCG00018599
AMCG00018595 mRNA downstream 69646 14824705 ~ 14830166 (-) True AMCG00018595
AMCG00018605 mRNA upstream 16767 14939774 ~ 14948267 (-) True AMCG00018605
AMCG00018604 mRNA upstream 34246 14957253 ~ 14957886 (-) True AMCG00018604
AMCG00018609 mRNA upstream 248955 15171962 ~ 15177670 (-) True AMCG00018609
AMCG00018610 mRNA upstream 314153 15237160 ~ 15292085 (-) True AMCG00018610
AMCG00018613 mRNA upstream 456736 15379743 ~ 15418462 (-) True AMCG00018613
TU147067 other downstream 161500 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 378937 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 1644043 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2988476 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 3696924 11199578 ~ 11202888 (-) True G116428
TU147284 other upstream 575655 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 575655 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2085891 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 2303083 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 2303083 17226090 ~ 17256271 (-) False G117823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070739 True 1669 mRNA 0.41 9 NC_007119.7 4621243 ~ 4694458 (-)
grasscarp (Ctenopharyngodon idella) CI01000158_01641190_01654617.mRNA True 1285 mRNA 0.49 12 CI01000158 1641084 ~ 1654617 (-)