RNA id: AMCG00018608


Basic Information

Item Value
RNA id AMCG00018608
length 363
RNA type mRNA
GC content 0.64
exon number 1
gene id AMCG00018608
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14927162 ~ 14927524 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGACCATCGCCGGGGCGCAGTGCACCAACTGCATCAGGGGCGAGTCGGTGAAGGCCAGGGTGGTCAACGCCGGGGGGGTCGTCTATATCATCAGCGCCTTGTTCGTGCTGGTGCCCCTGTGCTGGATGGCGCACAACATCATCGTCGATTTCTACGACCCCGCCGTGCCCTCGCCCAAGAAGAGGGAGATCGGAGCGTCTCTGTACATCGGCTGGGCCGCCACGGCGCTGCTCCTCCTCGGCGGcgggctgctctgctgctcctGTCCGGCCTCGGGGAACCCCGCGTACGCGGTCAGGTACGCACCCACGAAAAGAGCCGCGCAGAACGGGGACTACGATAAGAGGAATTACgtttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147080 lncRNA upstream 27244 14855079 ~ 14899918 (+) True G117380
TU147090 lncRNA upstream 130012 14796531 ~ 14797150 (+) True G117389
TU147089 lncRNA upstream 132923 14793885 ~ 14794239 (+) True G117388
TU147088 lncRNA upstream 133358 14792796 ~ 14793804 (+) True G117387
TU147083 lncRNA upstream 140675 14786025 ~ 14786487 (+) True G117382
TU147252 lncRNA downstream 564722 15492246 ~ 15529312 (+) True G117521
TU147253 lncRNA downstream 598190 15525714 ~ 15529341 (+) False G117521
TU147297 lncRNA downstream 699815 15627339 ~ 15627719 (+) True G117557
TU147318 lncRNA downstream 765689 15693213 ~ 15695253 (+) True G117574
TU147317 lncRNA downstream 767902 15695426 ~ 15698865 (+) True G117573
AMCG00018600 mRNA upstream 93098 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018593 mRNA upstream 102404 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018588 mRNA upstream 195498 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018586 mRNA upstream 280330 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018585 mRNA upstream 312717 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018603 mRNA downstream 22112 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018602 mRNA downstream 27150 14954674 ~ 14981705 (+) True AMCG00018602
AMCG00018611 mRNA downstream 502760 15430284 ~ 15468382 (+) True AMCG00018611
AMCG00018619 mRNA downstream 656069 15583593 ~ 15585087 (+) True AMCG00018619
AMCG00018618 mRNA downstream 710450 15637974 ~ 15648175 (+) True AMCG00018618
TU147084 other upstream 139029 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 150668 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 579421 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 685125 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 736085 14189003 ~ 14191077 (+) True AMCG00018553
TU147178 other downstream 27040 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2140688 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3053686 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 3053686 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 3791682 18719206 ~ 18721343 (+) True AMCG00018702

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1140440 False 1714 lncRNA 0.45 1 NC_048575.1 62555044 ~ 62556757 (+)