RNA id: AMCG00018610


Basic Information

Item Value
RNA id AMCG00018610
length 1350
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00018610
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15237160 ~ 15292085 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCCGTTGGAACTGCAGAGAGCCGGGGAGCGTCAGATGGCCAACAGAAGTTCTCTTCCCTGCCCACCTTCCTGCCTGTGTCCTACCAGATCCAAAATGCAGAGTCCTCCTTCTTCCTGAAGGAGGCCGGCCAGGAGGTGATGAGGAACACCAGCCTGCAGACTCGGGCCGAGCCTTTCTTTATCCACATGGCGGAAGGGATCCCCACGGTCAACTGCAGCTATGGCAACCTCTCTGCAGAGGCCCCCGTCCCCCTGGAGCTCCTGCAGTCCACACCTCGCATCCTCGCCGGCGCCACCCAGCTCACCTTCAACTGGAAAGTCAGGGCGCACATCGTCAACGACCGGGTACACTTCCAAAAGCCCAGAGTGCAGACTTTGTTCTACCTGACTGGGCGAAGCTGGGAGGAGGCTGCCCTGACTGAAAGGCTGCCCTGCATTAAGGTTTTTGCCTTCCAGGAGACCCAAGAGGTGATGGCAGGCTGCAGGCTGGAGGGGAGCCTGGGGATCTGTTTGGCGGAACTGGAGCTCCTGCCCAGCTGGTTCAGCCTGCCTCCGATGGGCCCGGGACGGAAGAAGCCCGCAGAGCAGTGGGACGGCACCAGTGTGGAGTTGTACTACACCGTGCAGCCGATGGAGGGCGATGGTGACTGCAGCACTGGGGACCCCAGGAAAGGCAATAATGCCATTCGCCCAGGGCAGGACGAGGCCTCGCCCTCCATGCTGCGGATTGGCTCGGTCTACCTCTACCACACCCCAGAGGACGGCCCCCTGGCGCCGGAGCTCAGGCTGGATGATAACCTTGTGATCCACGTGGCGCCCAGTCCTGTGAAGCAGGGTCAGATCATCACGTTTCGGATCTGCATGGAGGCCGTCTCCACAGTGGAGCAGTTCACACTGAGGGCCTTGTTTAAGGAAGGGGTGAACTTTCTCACCATGAAGCCCACTGACCCATTGCTGTGGGAcatcaaacaggaagtggagtCTGGAAGTTCGGCAGTGTTGGCTCTCTGTCAGAGGAGGATTATACCTGCAGGAAACAGCAGCACTGACCTGGAGACGTCTCAGGCCAAACTAGGACACACGGCCAAGCACACAATGCGGCAAACACCAACACAGCAGTTTGCTCTGCAGGACCTTATGCGGAGAGAAGGCCTCGCTAAATACACGCCTGTTTCCGAAAATGTTCCCATCCCCAGCCAAAGGCATCTGAAAGCCGCTAAGGCAAGCTCTGGTGAATGTCAGATTCAGCTGGGCTTCTTTGAGAAGGCTTTTGTCCCCAGTCCAATCTGCAGTTCTCAGACGTGTCCTGGCTCCCTGCTCATCACTGGAACCTCCCAGGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147223 lncRNA downstream 22729 15214168 ~ 15214431 (-) True G117501
TU147187 lncRNA downstream 256776 14979041 ~ 14980384 (-) True G117472
TU147151 lncRNA downstream 379565 14856420 ~ 14857595 (-) True G117441
TU147148 lncRNA downstream 401435 14833856 ~ 14835725 (-) True G117438
TU147142 lncRNA downstream 452847 14780287 ~ 14784313 (-) True G117432
TU147287 lncRNA upstream 206577 15498662 ~ 15516282 (-) False AMCG00018617
TU147288 lncRNA upstream 206577 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA upstream 224469 15516554 ~ 15518181 (-) False AMCG00018617
TU147400 lncRNA upstream 730513 16022598 ~ 16025073 (-) True G117646
TU147479 lncRNA upstream 1002745 16294830 ~ 16296445 (-) True G117710
AMCG00018609 mRNA downstream 59490 15171962 ~ 15177670 (-) True AMCG00018609
AMCG00018604 mRNA downstream 279274 14957253 ~ 14957886 (-) True AMCG00018604
AMCG00018605 mRNA downstream 288893 14939774 ~ 14948267 (-) True AMCG00018605
AMCG00018606 mRNA downstream 314153 14899812 ~ 14923007 (-) True AMCG00018606
AMCG00018607 mRNA downstream 351809 14880599 ~ 14885351 (-) True AMCG00018607
AMCG00018613 mRNA upstream 87658 15379743 ~ 15418462 (-) True AMCG00018613
AMCG00018612 mRNA upstream 129830 15421915 ~ 15428751 (-) True AMCG00018612
AMCG00018617 mRNA upstream 212366 15504451 ~ 15518315 (-) False AMCG00018617
AMCG00018614 mRNA upstream 234205 15526290 ~ 15535846 (-) True AMCG00018614
AMCG00018615 mRNA upstream 260619 15552704 ~ 15569734 (-) True AMCG00018615
TU147067 other downstream 498848 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 716285 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 1981391 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 3325824 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 4034272 11199578 ~ 11202888 (-) True G116428
TU147284 other upstream 206577 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 206577 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 1716813 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 1934005 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 1934005 17226090 ~ 17256271 (-) False G117823

Expression Profile