RNA id: AMCG00018611


Basic Information

Item Value
RNA id AMCG00018611
length 3034
RNA type mRNA
GC content 0.47
exon number 21
gene id AMCG00018611
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15430284 ~ 15468382 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGATTTCCTTGCTGGACAGTTTTCACGGAAGTGGTGTGGGAAGCGACTgtgtcttatttgtttttttaacacaaaatatcTTAAATTTGTGGATTTACACCACACAGAGACTGCGAGTTTTTTCCTCTCGAAAAGGCACCATATAAAGCCGTCAAGATGGGGAAGAGACAGCACCAAAAGGATAAAATGTACATCACGTGTTCTGAGTACACGCACTTCTATGGAGGAAAGAAACCAGaTATCCCGAAGGCTAACTTCAGGCGCTTGCCGTTTGATCACTGCAGtctaTCCCTTCAGCCATTTGAGTATCCCATGTGCACACCTGAAGGGCATGTCTTTGATTTGCTGAGCATAGTTCCCTGGATAAAGAAATTTGGGACCAACCCAATATCTGGAGAGAAACTGGAAGCCAAGTCCCTCATCAAGCTGAACATTGCAAAGAACAACGAAGGGAAGTTCCACTGCCCCGTCCTGTACAATGTGTTCACCAACAACTCGCACATAGTGGCCAACATGAAAACCGGCAACGTGTTTTCCTATGAGGCCGTGGAACAGCTCAATGTCAAAACCAAATCTTACAAGGACCTGCTGACCGACGAGCCCTTCTCTCGCTCGGACATCATCACTCTACAGgaTCCCACAAACCTGGACAAGTTCAACGTCTCCAACTTCTTCCATGTTAAGAACAACTTGAAGGTCCCAGATCCAGATGAGGAGAAAGCCAGGTTGGACCCCTCGTACCATCTGAAGAGCACCAACATGGAAACCAGGGAGACGCTGGCTGAGCTCTACAAAGATTTCAAGGGCGACGAAATGCTGGCTGCCACTATGAAAGAACCAGCGACAAAGAAAACTGACAAACTGAATGCGGTCCGGTGCTTTGCCAAGGCCAGTCAGAGGCAGAACCGCAGCGGGCTGGCTTTGCCCAGTGAGCCAATGATGTTCTTAGCTGAGACGCCCAGCCTCCCCATGACTCTGTCACTGCAAGTGACAACTCTTGATGCCATTGAGGACGACACAGTGCGCTACCAGTACGTGAAGAAGAAGGGCTACGTCCGGCTGCACACCAACAAGGGGGACATCAATCTGGAGTTGTACTGTGACAAGGTGCCGATAGCAGGTGAAAACTTCATCAAGCTCTGCAAGAAGGGTTACTATGATGGGACTATTTTCCACAGATCCATCCGAAACTTTATGATTCAAGGTGGGGATCCTACAGGAACAGGCACAGGTGGAGAGTCGCACTGGGGAAAGCCATTCAAGGACGAGTTCAGGCCCAACCTCTCCCACACTGGTCGAGGAGTCCTCAGCATGGCAAACTCTGGGCCCAATTGCAATAAATCTCAGTTCTTCATAACATTTCGTTCCTGCCCCTACCTGGACAGGAAGCACACAGTCTTTGGCAGCTGTCGGAAGCCAATTTTAGTGTTTTATGAAGAGACCCACAACAAAATCAACCAGACCGGCACAGCATGTTTAAGAGGCCGCTTCAGTACAGTGTTCTGCGATGCTTCCTGTGATTCCGAGATTAAACTCCTGAGTGCCACCGTGTTTGTGGATCCCTACGAAGAGGCTGATGCCCAGATCGCAGCGGAGCGGGAGAAGACTCTGAGAGAGCAAGAGGAGGAGCGAGCACGGACCAGTGCCGAGCGGCCCAAGACCGACGCTGAACAGGCCCCCAAGACCTACCGGCCAGGAGTGGGAAAGTACATCAACGTGGTGCCAAAGAAACGGTCGGCCCCGGAGGTGGAAAGTGGACCCTCCACTAGCGCTGTCAAGAAGCCGAAGGGAAAAACTGGCTTTGGGGATTTCAGCTCCTGGTAGAGCAGGAATGGACACTGCCAGACCCAGACCACACTGACGGGACAGGGGCCATTGCAAAGACTGCAGAACCAGCCGCAGGCATTGTGGGTTATTGTGCCACACACTTGAGCTATACAACTCCTCAGTGTTGTTGCAGCTGTGCTTGTTGCTCATGTACAGTAAATCGGTAGAAGCCGCCCCAGGGATGAGCAGGTCTGCGGATGGAAAAAGTGTGAGTGGGTGATGGTAGATCTTTATTATGGGGAGGGAAAaattctgatgtttttttttattattattattattgggttgGGTACAGGGGGGGTTCATTGGGAGTAGCTGGGGATAGGAAATTAAATctcatgtaaaataatctttCTTCCTTCAACACTGCAGGGTGTCATTATTATCCTATTTTTCCAGTcgtaaaagtttttttttgtttttataaatcgttattatttttcctttttattgtgcaaagttgtaataaaataacatttgcaattaCGATTTGCTTCCTCCATGATGTACAATGTAATGGCAGACTGCTGTGACAGGTTTCAGGTTTTGTGGAGAGGCAGAGGGTTCTGCTgtctcggggggggggggtcctcgTCAGTTTCCTGTGAGGCGGCACTCCCAGTCGCCAGGGTGAGAGATAGTGTAAGAGTGTGACAGCTCGGTGACAACTTGCTACACTCTAATAATCTGATTGTCTTATTATAATTCAGATTTTCTTTGGTTGCGGACCATGCTCAGAGATGTCGCTAATATCTTAAACACCCTTCCCCAATTGCATAATTTCCAGAATGTACCAGAACCTGTGCGAATGGCTGCCGTTTCCTGTTCTGAGCTCTACTTTTATTGTGATGTCTggttttgttggtttgtgtgtttcagatgTAACTTCTTTTTGTCATTGCATTAGATTGGAAACTATTTTTCTCAGCTGATTCTATGAGAGTAGTTTCTTCCAGTCAGGTTATGGACTTTTTGAACATAGATGTGTTTTGTGAACTAAACTCAAGGTAAAGTTCACAAAGAACCGCTCTTCAGCAAAGGCCTTGCACTATAATTGTAGTCTGATCTAATTCACACTTCTAATTCTagtctatatgtatatgtataatttagtgttttattaaattttttacTGTCTGCTTCCCTTCTTGTGTGAACAGAGTGTTGCGTCTCTGGATTGTCTCCCGgatattaaacatttaccaG

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K10598 PPIL2, CYC4, CHP60; peptidyl-prolyl cis-trans isomerase-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147080 lncRNA upstream 530366 14855079 ~ 14899918 (+) True G117380
TU147090 lncRNA upstream 633134 14796531 ~ 14797150 (+) True G117389
TU147089 lncRNA upstream 636045 14793885 ~ 14794239 (+) True G117388
TU147088 lncRNA upstream 636480 14792796 ~ 14793804 (+) True G117387
TU147083 lncRNA upstream 643797 14786025 ~ 14786487 (+) True G117382
TU147252 lncRNA downstream 23864 15492246 ~ 15529312 (+) True G117521
TU147253 lncRNA downstream 57332 15525714 ~ 15529341 (+) False G117521
TU147297 lncRNA downstream 158957 15627339 ~ 15627719 (+) True G117557
TU147318 lncRNA downstream 224831 15693213 ~ 15695253 (+) True G117574
TU147317 lncRNA downstream 227044 15695426 ~ 15698865 (+) True G117573
AMCG00018602 mRNA upstream 448579 14954674 ~ 14981705 (+) True AMCG00018602
AMCG00018603 mRNA upstream 476021 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018608 mRNA upstream 502760 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018600 mRNA upstream 596220 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018593 mRNA upstream 605526 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018619 mRNA downstream 115211 15583593 ~ 15585087 (+) True AMCG00018619
AMCG00018618 mRNA downstream 169592 15637974 ~ 15648175 (+) True AMCG00018618
AMCG00018620 mRNA downstream 200433 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018624 mRNA downstream 214073 15682455 ~ 15691741 (+) True AMCG00018624
AMCG00018623 mRNA downstream 303927 15772309 ~ 15777303 (+) True AMCG00018623
TU147178 other upstream 473704 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 642151 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 653790 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 1082543 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 1188247 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 1599830 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 2512828 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 2512828 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 3250824 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3980244 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile